Research on anti-HIV-1 agents. Investigation on the CD4-Suradista binding mode through docking experiments. - Fabrizio Manetti; Federico Corelli; Nicola Mongelli; Andrea Lombardi Borgia; Maurizio Botta (J. Comput. Aided Mol. Des., 2000)

A Genetic-Function-Approximation-Based QSAR Model for the Affinity of Arylpiperazines toward alpha1 Adrenoceptors. - Laura Maccari; Matteo Magnani; Giovannella Strappaghetti; Federico Corelli; Maurizio Botta; Fabrizio Manetti (J. Chem. Inf. Model., 2006)

A Combination of Molecular Dynamics and Docking Calculations to Explore the Binding Mode of ADS-J1, a Polyanionic Compound Endowed with Anti-HIV-1 Activity. - Fabrizio Manetti; Cristina Tintori; Mercedes Armand-Ugón; Imma Clotet-Codina; Silvio Massa; Rino Ragno; José A. Esté; Maurizio Botta (J. Chem. Inf. Model., 2006)

Novel Virtual Screening Protocol Based on the Combined Use of Molecular Modeling and Electron-Ion Interaction Potential Techniques To Design HIV-1 Integrase Inhibitors. - Cristina Tintori; Fabrizio Manetti; Nevena Veljkovic; Vladimir Perovic; Jo Vercammen; Sean Hayes; Silvio Massa; Myriam Witvrouw; Zeger Debyser; Veljko Veljkovic; Maurizio Botta (J. Chem. Inf. Model., 2007)

Construction and Validation of a RET TK Catalytic Domain by Homology Modeling. - Tiziano Tuccinardi; Fabrizio Manetti; Silvia Schenone; Adriano Martinelli; Maurizio Botta (J. Chem. Inf. Model., 2007)

Targets Looking for Drugs: A Multistep Computational Protocol for the Development of Structure-Based Pharmacophores and Their Applications for Hit Discovery. - Cristina Tintori; Valentina Corradi; Matteo Magnani; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2008)

Molecular Dynamics and DFT Study on HIV-1 Nucleocapsid Protein-7 in Complex with Viral Genome. - Mattia Mori; Ursula Dietrich; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2010)

Predicting the Binding Mode of Known NCp7 Inhibitors To Facilitate the Design of Novel Modulators. - Mattia Mori; Fabrizio Manetti; Maurizio Botta (J. Chem. Inf. Model., 2011)

Pharmacophore Assessment Through 3-D QSAR: Evaluation of the Predictive Ability on New Derivatives by the Application on a Series of Antitubercular Agents. - Laura Friggeri; Flavio Ballante; Rino Ragno; Ira Musmuca; Daniela de Vita; Fabrizio Manetti; Mariangela Biava; Luigi Scipione; Roberto Di Santo; Roberta Costi; Marta Feroci; Silvano Tortorella (J. Chem. Inf. Model., 2013)

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria. - Andrea Bernini; Silvia Galderisi; Ottavia Spiga; Giulia Bernardini 003; Neri Niccolai; Fabrizio Manetti; Annalisa Santucci (Comput. Biol. Chem., 2017)

In Memory of Maurizio Botta: His Contribution to the Development of Computer-Aided Drug Design. - Mattia Mori; Fabrizio Manetti; Bruno Botta; Andrea Tafi (J. Chem. Inf. Model., 2019)

Machine Learning for Predicting the Drug-to-Antibody Ratio (DAR) in the Synthesis of Antibody-Drug Conjugates (ADCs). - Lorenzo Angiolini; Fabrizio Manetti; Ottavia Spiga; Andrea Tafi; Anna Visibelli; Elena Petricci (J. Chem. Inf. Model., 2025)