Prediction of Cell Type Specific Transcription Factor Binding Site Occupancy. - Faizy Ahsan; Doina Precup; Mathieu Blanchette (BCB, 2016)

Lessons from an Online Massive Genomics Computer Game. - Akash Singh; Faizy Ahsan; Mathieu Blanchette; Jérôme Waldispühl (HCOMP, 2017)

Phylogenetic Manifold Regularization: A semi-supervised approach to predict transcription factor binding sites. - Faizy Ahsan; Alexandre Drouin; François Laviolette; Doina Precup; Mathieu Blanchette (BIBM, 2020)

PhyloPGM: boosting regulatory function prediction accuracy using evolutionary information. - Faizy Ahsan; Zichao Yan; Doina Precup; Mathieu Blanchette (Bioinform., 2022)