Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution. - Yu Zhao 009; Fan Yang 081; Yuqi Fang; Hailing Liu; Niyun Zhou; Jun Zhang 018; Jiarui Sun; Sen Yang 006; Bjoern H. Menze; Xinjuan Fan; Jianhua Yao 001 (CVPR, 2020)

Microsatellite Instability Prediction of Uterine Corpus Endometrial Carcinoma Based on H&E Histology Whole-Slide Imaging. - Tongxin Wang; Weijia Lu; Fan Yang 081; Li Liu 017; Zhongyi Dong; Weimin Tang; Jia Chang; Wenjing Huan; Kun Huang 001; Jianhua Yao 001 (ISBI, 2020)

An Interpretable Multi-Level Enhanced Graph Attention Network for Disease Diagnosis with Gene Expression Data. - Xiaohan Xing; Fan Yang 081; Hang Li; Jun Zhang 018; Yu Zhao 009; Mingxuan Gao; Junzhou Huang; Jianhua Yao 001 (BIBM, 2021)

Mining the Associations between V(D)J Gene Segments and COVID-19 Disease Characteristics. - Yu Zhao 009; Yidan Zhang; Zhi-An Huang; Fan Yang 081; Lei Duan; Jianhua Yao 001 (BIBM, 2021)

Multi-modal Multi-instance Learning Using Weakly Correlated Histopathological Images and Tabular Clinical Information. - Hang Li; Fan Yang 081; Xiaohan Xing; Yu Zhao 009; Jun Zhang 018; Yueping Liu; Mengxue Han; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (MICCAI (8), 2021)

DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image. - Hang Li; Fan Yang 081; Yu Zhao 009; Xiaohan Xing; Jun Zhang 018; Mingxuan Gao; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (MICCAI (8), 2021)

Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. - Jiawei Li 018; Fan Yang 081; Fang Wang 028; Yu Rong 001; Peilin Zhao; Shizhan Chen; Jianhua Yao 001; Jijun Tang; Fei Guo 001 (BIBM, 2022)

Multimodal Dynamics: Dynamical Fusion for Trustworthy Multimodal Classification. - Zongbo Han; Fan Yang 081; Junzhou Huang; Changqing Zhang; Jianhua Yao 001 (CVPR, 2022)

ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. - Jiawei Yang 002; Hanbo Chen; Yu Zhao 009; Fan Yang 081; Yao Zhang 010; Lei He 001; Jianhua Yao 001 (MICCAI (2), 2022)

UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup. - Zongbo Han; Zhipeng Liang; Fan Yang 081; Liu Liu 014; Lanqing Li; Yatao Bian; Peilin Zhao; Bingzhe Wu; Changqing Zhang; Jianhua Yao 001 (NeurIPS, 2022)

Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis. - Xiaohan Xing; Fan Yang 081; Hang Li; Jun Zhang 018; Yu Zhao 009; Mingxuan Gao; Junzhou Huang; Jianhua Yao 001 (Bioinform., 2022)

scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data. - Fan Yang 081; Wenchuan Wang; Fang Wang 028; Yuan Fang; Duyu Tang; Junzhou Huang; Hui Lu 004; Jianhua Yao 001 (Nat. Mac. Intell., 2022)

Reweighted Mixup for Subpopulation Shift. - Zongbo Han; Zhipeng Liang; Fan Yang 081; Liu Liu 014; Lanqing Li; Yatao Bian; Peilin Zhao; Qinghua Hu; Bingzhe Wu; Changqing Zhang; Jianhua Yao 001 (CoRR, 2023)

Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire. - Yu Zhao 009; Bing He; Zhimeng Xu; Yidan Zhang; Xuan Zhao; Zhi-An Huang; Fan Yang 081; Liang Wang 015; Lei Duan; Jiangning Song; Jianhua Yao 001 (Briefings Bioinform., 2023)

scMHNN: a novel hypergraph neural network for integrative analysis of single-cell epigenomic, transcriptomic and proteomic data. - Wei Li 184; Bin Xiang; Fan Yang 081; Yu Rong 001; Yanbin Yin; Jianhua Yao 001; Han Zhang 017 (Briefings Bioinform., 2023)

Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling. - Fang Wang 028; Fan Yang 081; Longkai Huang; Wei Li 184; Jiangning Song; Robin B. Gasser; Ruedi Aebersold; Guohua Wang; Jianhua Yao 001 (Nat. Mac. Intell., 2023)

Reply to: Deeper evaluation of a single-cell foundation model. - Fan Yang 081; Fang Wang 028; Longkai Huang; Linjing Liu; Junzhou Huang; Jianhua Yao 001 (Nat. Mac. Intell., 2024)

Current opinions on large cellular models. - Minsheng Hao; Lei Wei; Fan Yang 081; Jianhua Yao 001; Christina V. Theodoris; Bo Wang 044; Xin Li; Ge Yang 002; Xuegong Zhang (Quant. Biol., 2024)

Opportunistic Osteoporosis Diagnosis via Texture-Preserving Self-Supervision, Mixture of Experts and Multi-Task Integration. - Jiaxing Huang; Heng Guo; Le Lu 001; Fan Yang 081; Minfeng Xu; Ge Yang 002; Wei Luo (CoRR, 2025)