STEAM: Spatial Transcriptomics Evaluation Algorithm and Metric for clustering performance. - Samantha Reynoso; Courtney Schiebout; Revanth Krishna; Fan Zhang 133 (Briefings Bioinform., 2025)

BuDDI: Bulk Deconvolution with Domain Invariance to predict cell-type-specific perturbations from bulk. - Natalie R. Davidson; Fan Zhang 133; Casey S. Greene (PLoS Comput. Biol., 2025)