Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network. - Jingcheng Du; Fang Li 011; Yuxi Jia; Yang Xiang 003; Lu Tang; Sahiti Myneni; Cui Tao (AMIA, 2018)

Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology. - Fang Li 011; Jingcheng Du; Guozheng Rao; Cui Tao (AMIA, 2018)

X-A-BiLSTM: a Deep Learning Approach for Depression Detection in Imbalanced Data. - Qing Cong; Zhiyong Feng 002; Fang Li 011; Yang Xiang 003; Guozheng Rao; Cui Tao (BIBM, 2018)

Constructing Biomedical Knowledge Graph Based on SemMedDB and Linked Open Data. - Qing Cong; Zhiyong Feng 002; Fang Li 011; Li Zhang 059; Guozheng Rao; Cui Tao (BIBM, 2018)

Term Standardization and Normalization for Research Domain Criteria (RDoC). - Fang Li 011; Guozheng Rao; Jingcheng Du; Yang Xiang 003; Yaoyun Zhang; Salih Selek; Jane Elizabeth Hamilton; Hua Xu 001; Cui Tao (ICHI Workshops, 2018)

Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology. - Fang Li 011; Mingqiang Wang; Huy Anh Pham; Yang Xiang 003; Muhammad Tuan Amith; Cui Tao; Jingcheng Du; Guozheng Rao (ICHI, 2019)

A Multi-Source Linked Open Data Fusion Method for Gene Disorder Drug Relationship Querying. - Guozheng Rao; Li Zhang 059; Xiaowang Zhang; Wenwen Li; Fang Li 011; Cui Tao (SEPDA@ISWC, 2019)

Time-sensitive clinical concept embeddings learned from large electronic health records. - Yang Xiang 003; Jun Xu 007; Yuqi Si; Zhiheng Li 004; Laila Rasmy; Yujia Zhou 003; Firat Tiryaki; Fang Li 011; Yaoyun Zhang; Yonghui Wu; Xiaoqian Jiang; W. Jim Zheng; et al. (BMC Medical Informatics Decis. Mak., 2019)

Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media. - Jingcheng Du; Rachel Cunningham; Yang Xiang 001; Fang Li 011; Yuxi Jia; Julie A. Boom; Sahiti Myneni; Jiang Bian 001; Chongliang Luo; Yong Chen 016; Cui Tao (npj Digit. Medicine, 2019)

Ontological representation-oriented term normalization and standardization of the Research Domain Criteria. - Fang Li 011; Guozheng Rao; Jingcheng Du; Yang Xiang 003; Yaoyun Zhang; Salih Selek; Jane Elizabeth Hamilton; Hua Xu 001; Cui Tao (Health Informatics J., 2020)

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. - Fang Li 011; Jingcheng Du; Yongqun He; Hsing-yi Song; Mohcine Madkour; Guozheng Rao; Yang Xiang 003; Yi Luo; Henry W. Chen; Sijia Liu 002; Liwei Wang 010; Hongfang Liu; et al. (J. Am. Medical Informatics Assoc., 2020)

A semantic relationship mining method among disorders, genes, and drugs from different biomedical datasets. - Li Zhang 059; Jiamei Hu; Qianzhi Xu; Fang Li 011; Guozheng Rao; Cui Tao (BMC Medical Informatics Decis. Mak., 2020)

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery. - Yi Nian; Jingcheng Du; Larry Bu; Fang Li 011; Xinyue Hu 002; Yuji Zhang 001; Cui Tao (CoRR, 2021)

Chemical-Protein Relation Extraction with Pre-trained Prompt Tuning. - Jianping He 002; Fang Li 011; Xinyue Hu 002; Jianfu Li; Yi Nian; Jingqi Wang; Yang Xiang 003; Qiang Wei 002; Hua Xu 001; Cui Tao (ICHI, 2022)

Toward a standard formal semantic representation of the model card report. - Muhammad Tuan Amith; Licong Cui; Degui Zhi; Kirk Roberts; Xiaoqian Jiang; Fang Li 011; Evan Yu; Cui Tao (BMC Bioinform., 2022)

Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing. - Yi Nian; Xinyue Hu 002; Rui Zhang 028; Jingna Feng; Jingcheng Du; Fang Li 011; Larry Bu; Yuji Zhang 001; Yong Chen 016; Cui Tao (BMC Bioinform., 2022)

Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing. - Yi Nian; Xinyue Hu 002; Rui Zhang 028; Jingna Feng; Jingcheng Du; Fang Li 011; Yong Chen 016; Cui Tao (CoRR, 2022)

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). - Yifang Dang; Fang Li 011; Xinyue Hu 002; Vipina Kuttichi Keloth; Meng Zhang; Sunyang Fu; Jingcheng Du; J. Wilfred Fan; Muhammad F. Amith; Evan Yu; Hongfang Liu; Xiaoqian Jiang; et al. (CoRR, 2022)

Replay with Stochastic Neural Transformation for Online Continual EEG Classification. - Tiehang Duan; Zhenyi Wang 001; Gianfranco Doretto; Fang Li 011; Cui Tao; Donald A. Adjeroh (BIBM, 2023)

Distributionally Robust Cross Subject EEG Decoding. - Tiehang Duan; Zhenyi Wang 001; Gianfranco Doretto; Fang Li 011; Cui Tao; Donald A. Adjeroh (ECAI, 2023)

Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions. - Fang Li 011; Yi Nian; Zenan Sun; Cui Tao (CoRR, 2023)

Explainable Graph Neural Network for Alzheimer's Disease And Related Dementias Risk Prediction. - Xinyue Hu 002; Zenan Sun; Yi Nian; Yifang Dang; Fang Li 011; Jingna Feng; Evan Yu; Cui Tao (CoRR, 2023)

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). - Yifang Dang; Fang Li 011; Xinyue Hu 002; Vipina Kuttichi Keloth; Meng Zhang; Sunyang Fu; Muhammad F. Amith; J. Wilfred Fan; Jingcheng Du; Evan Yu; Hongfang Liu; Xiaoqian Jiang; et al. (J. Am. Medical Informatics Assoc., 2023)

A Comparative Study of Recent Large Language Models on Generating Hospital Discharge Summaries for Lung Cancer Patients. - Yiming Li; Fang Li 011; Kirk Roberts; Licong Cui; Cui Tao; Hua Xu 001 (CoRR, 2024)

RefAI: a GPT-powered retrieval-augmented generative tool for biomedical literature recommendation and summarization. - Yiming Li; Jeff Zhao; Manqi Li; Yifang Dang; Evan Yu; Jianfu Li; Zenan Sun; Usama Hussein; Jianguo Wen; Ahmed M. Abdelhameed; Junhua Mai; Shenduo Li; et al. (J. Am. Medical Informatics Assoc., 2024)

FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. - Sunyang Fu; Heling Jia; Maria Vassilaki; Vipina Kuttichi Keloth; Yifang Dang; Yujia Zhou 003; Muskan Garg; Ronald C. Petersen; Jennifer St Sauver; Sungrim Moon; Liwei Wang 010; Andrew Wen; et al. (J. Biomed. Informatics, 2024)

Artificial intelligence-powered pharmacovigilance: A review of machine and deep learning in clinical text-based adverse drug event detection for benchmark datasets. - Yiming Li; Wei Tao; Zehan Li; Zenan Sun; Fang Li 011; Susan H. Fenton; Hua Xu 001; Cui Tao (J. Biomed. Informatics, 2024)

Online continual decoding of streaming EEG signal with a balanced and informative memory buffer. - Tiehang Duan; Zhenyi Wang 001; Fang Li 011; Gianfranco Doretto; Donald A. Adjeroh; Yiyi Yin; Cui Tao (Neural Networks, 2024)

Evaluating MedDRA-to-ICD terminology mappings. - Xinyuan Zhang 003; Yixue Feng 001; Fang Li 011; Jin Ding; Danyal Tahseen; Ezekiel Hinojosa; Yong Chen 016; Cui Tao (BMC Medical Informatics Decis. Mak., 2024)

Prompt Tuning in Biomedical Relation Extraction. - Jianping He 002; Fang Li 011; Jianfu Li; Xinyue Hu 002; Yi Nian; Yang Xiang 003; Jingqi Wang; Qiang Wei 002; Yiming Li; Hua Xu 001; Cui Tao (J. Heal. Informatics Res., 2024)

Retain and Adapt: Online Sequential EEG Classification With Subject Shift. - Tiehang Duan; Zhenyi Wang 001; Li Shen 008; Gianfranco Doretto; Donald A. Adjeroh; Fang Li 011; Cui Tao (IEEE Trans. Artif. Intell., 2024)

Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models. - Jianfu Li; Yiming Li; Yuanyi Pan; Jinjing Guo; Zenan Sun; Fang Li 011; Yongqun He; Cui Tao (J. Biomed. Semant., 2024)

A comparative study of recent large language models on generating hospital discharge summaries for lung cancer patients. - Yiming Li; Fang Li 011; Na Hong; Manqi Li; Kirk Roberts; Licong Cui; Cui Tao; Hua Xu 001 (J. Biomed. Informatics, 2025)