ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules. - Anthony A. Philippakis; Fangxue Sherry He; Martha L. Bulyk (Pacific Symposium on Biocomputing, 2005)

Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells. - Anthony A. Philippakis; Brian W. Busser; Stephen S. Gisselbrecht; Fangxue Sherry He; Beatriz Estrada; Alan M. Michelson; Martha L. Bulyk (PLoS Comput. Biol., 2006)