Mechanisms of amphipathic helical peptide denaturation by guanidinium chloride and urea: a molecular dynamics simulation study. - Faramarz Mehrnejad; Mahmoud Khadem-Maaref; Mohammad Mehdi Ghahremanpour; Farahnoosh Doustdar (J. Comput. Aided Mol. Des., 2010)

Identification of the Crucial Residues in the Early Insertion of Pardaxin into Different Phospholipid Bilayers. - Majid Jafari; Faramarz Mehrnejad; Raheleh Aghdami; Nader Chaparzadeh; Zahra Razaghi Moghadam Kashani; Farahnoosh Doustdar (J. Chem. Inf. Model., 2017)

Molecular Self-Assembly Strategy for Encapsulation of an Amphipathic α-Helical Antimicrobial Peptide into the Different Polymeric and Copolymeric Nanoparticles. - Majid Jafari; Farahnoosh Doustdar; Faramarz Mehrnejad (J. Chem. Inf. Model., 2019)

Molecular Basis for Membrane Selectivity of Antimicrobial Peptide Pleurocidin in the Presence of Different Eukaryotic and Prokaryotic Model Membranes. - Reza Talandashti; Hamid Mahdiuni; Majid Jafari; Faramarz Mehrnejad (J. Chem. Inf. Model., 2019)

Molecular Insight into the Interaction between Camptothecin and Acyclic Cucurbit[4]urils as Efficient Nanocontainers in Comparison with Cucurbit[7]uril: Molecular Docking and Molecular Dynamics Simulation. - Nasim Ahmadian; Faramarz Mehrnejad; Mehriar Amininasab (J. Chem. Inf. Model., 2020)

Refinement of coding SNPs in the human aryl hydrocarbon receptor gene using ISNPranker: An integrative-SNP ranking web-tool. - Younes Aftabi; Saleh Rafei; Habib Zarredar; Amir Amiri-Sadeghan; Mohsen Akbari-Shahpar; Zahra Khoshkam; Ensiyeh Seyedrezazadeh; Majid Khalili; Faramarz Mehrnejad; Sasan Fereidouni; B. Paige Lawrence (Comput. Biol. Chem., 2021)