Flows with Bounded Waiting Time in Networked and Distributed Systems. - Ali Rajabi; Farhad Hormozdiari; Ahmad Khonsari (Asia International Conference on Modelling and Simulation, 2007)

Mathematical Analysis of Delay Line to Wavelength Allocation Algorithmsin Optical Networks. - Farhad Hormozdiari; Ali Rajabi; Ahmad Khonsari (MASCOTS, 2007)

Analysis of the Impact of Wavelength Converters on Contention Resolution in Optical Burst Switching. - Ali Rajabi; Aresh Dadlani; Farhad Hormozdiari; Ahmad Khonsari; Ahmad Kianrad; Hassan Seyed Razi (Asia International Conference on Modelling and Simulation, 2008)

Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set. - Iurii Sushko; Sergii Novotarskyi; Robert Körner; Anil Kumar Pandey; Artem Cherkasov; Jiazhong Li; Paola Gramatica; Katja Hansen; Timon Schroeter; Klaus-Robert Müller; Lili Xi; Huanxiang Liu; et al. (J. Chem. Inf. Model., 2010)

Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. - Dan He 001; Farhad Hormozdiari; Nicholas A. Furlotte; Eleazar Eskin (Bioinform., 2011)

Assembly of non-unique insertion content using next-generation sequencing. - Nathaniel Parrish; Farhad Hormozdiari; Eleazar Eskin (BMC Bioinform., 2011)

Efficient genotyping of individuals using overlapping pool sequencing and imputation. - Farhad Hormozdiari; Zhanyong Wang; Wen-Yun Yang; Eleazar Eskin (ACSCC, 2012)

Sensitive and fast mapping of di-base encoded reads. - Farhad Hormozdiari; Faraz Hach; Süleyman Cenk Sahinalp; Evan E. Eichler; Can Alkan (Bioinform., 2012)

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. - Wen-Yun Yang; Farhad Hormozdiari; Zhanyong Wang; Dan He 001; Bogdan Pasaniuc; Eleazar Eskin (Bioinform., 2013)

Accelerating read mapping with FastHASH. - Hongyi Xin; Donghyuk Lee; Farhad Hormozdiari; Samihan Yedkar; Onur Mutlu; Can Alkan (BMC Genom., 2013)

eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. - Itamar Eskin; Farhad Hormozdiari; Lucía Conde; Jacques Riby; Christine F. Skibola; Eleazar Eskin; Eran Halperin (J. Comput. Biol., 2013)

CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. - Zhanyong Wang; Farhad Hormozdiari; Wen-Yun Yang; Eran Halperin; Eleazar Eskin (J. Comput. Biol., 2013)

Identifying causal variants at loci with multiple signals of association. - Farhad Hormozdiari; Emrah Kostem; Eun Yong Kang; Bogdan Pasaniuc; Eleazar Eskin (BCB, 2014)

A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. - Wen-Yun Yang; Farhad Hormozdiari; Eleazar Eskin; Bogdan Pasaniuc (RECOMB, 2014)

Privacy preserving protocol for detecting genetic relatives using rare variants. - Farhad Hormozdiari; Jong Wha J. Joo; Akshay Wadia; Feng Guan; Rafail Ostrovsky; Amit Sahai; Eleazar Eskin (Bioinform., 2014)

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications. - Faraz Hach; Iman Sarrafi; Farhad Hormozdiari; Can Alkan; Evan E. Eichler; Süleyman Cenk Sahinalp (Nucleic Acids Res., 2014)

Identification of causal genes for complex traits. - Farhad Hormozdiari; Gleb Kichaev; Wen-Yun Yang; Bogdan Pasaniuc; Eleazar Eskin (Bioinform., 2015)

PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling. - Danny S. Park; Yael Baran; Farhad Hormozdiari; Celeste Eng; Dara G. Torgerson; Esteban Gonzàlez Burchard; Noah Zaitlen (BMC Bioinform., 2015)

Memory efficient assembly of human genome. - Farhad Hormozdiari; Eleazar Eskin (J. Bioinform. Comput. Biol., 2015)

A Spatial Haplotype Copying Model with Applications to Genotype Imputation. - Wen-Yun Yang; Farhad Hormozdiari; Eleazar Eskin; Bogdan Pasaniuc (J. Comput. Biol., 2015)

HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. - Serghei Mangul; Harry (Taegyun) Yang; Farhad Hormozdiari; Elizabeth Tseng; Alex Zelikovsky; Eleazar Eskin (ISBRA, 2016)

The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB). - Farhad Hormozdiari; Fereydoun Hormozdiari; Carl Kingsford; Paul Medvedev; Fabio Vandin (RECOMB, 2016)

Using genomic annotations increases statistical power to detect eGenes. - Dat Duong; Jennifer Zou; Farhad Hormozdiari; Jae Hoon Sul; Jason Ernst; Buhm Han; Eleazar Eskin (Bioinform., 2016)

Statistical Methods to Understand the Genetic Architecture of Complex Traits. - Farhad Hormozdiari (2016)

The impact of rare variation on gene expression across tissues. - Xin Li 130; Yungil Kim; Emily K. Tsang; Joe R. Davis; Farhan N. Damani; Colby Chiang; Gaelen T. Hess; Zachary Zappala; Benjamin J. Strober; Alexandra J. Scott; Amy Li; Andrea Ganna; et al. (Nat., 2017)

Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. - Yue Wu; Farhad Hormozdiari; Jong Wha J. Joo; Eleazar Eskin (J. Comput. Biol., 2019)

Identifying Causal Variants by Fine Mapping Across Multiple Studies. - Nathan LaPierre; Kodi Taraszka; Helen Huang; Rosemary He; Farhad Hormozdiari; Eleazar Eskin (RECOMB, 2020)

Underspecification Presents Challenges for Credibility in Modern Machine Learning. - Alexander D'Amour; Katherine A. Heller; Dan Moldovan; Ben Adlam; Babak Alipanahi; Alex Beutel; Christina Chen; Jonathan Deaton; Jacob Eisenstein; Matthew D. Hoffman; Farhad Hormozdiari; Neil Houlsby; et al. (J. Mach. Learn. Res., 2022)

Multimodal LLMs for Health Grounded in Individual-Specific Data. - Anastasiya Belyaeva; Justin Cosentino; Farhad Hormozdiari; Krish Eswaran; Shravya Shetty; Greg Corrado; Andrew Carroll; Cory Y. McLean; Nicholas A. Furlotte (ML4MHD, 2023)

Advancing Multimodal Medical Capabilities of Gemini. - Lin Yang; Shawn Xu; Andrew Sellergren; Timo Kohlberger; Yuchen Zhou; Ira Ktena; Atilla P. Kiraly; Faruk Ahmed; Farhad Hormozdiari; Tiam Jaroensri; Eric Wang; Ellery Wulczyn; et al. (CoRR, 2024)