Virtual Compound Libraries: A New Approach to Decision Making in Molecular Discovery Research. - Richard D. Cramer; David E. Patterson; Robert D. Clark; Farhad Soltanshahi; Michael S. Lawless (J. Chem. Inf. Comput. Sci., 1998)

OptDesign: Extending Optimizable k-Dissimilarity Selection to Combinatorial Library Design. - Robert D. Clark; Julia Kar; Lakshmi B. Akella; Farhad Soltanshahi (J. Chem. Inf. Comput. Sci., 2003)

Balancing focused combinatorial libraries based on multiple GPCR ligands. - Farhad Soltanshahi; Tamsin E. Mansley; Sun Choi; Robert D. Clark (J. Comput. Aided Mol. Des., 2006)

AllChem: generating and searching 1020 synthetically accessible structures. - Richard D. Cramer; Farhad Soltanshahi; Robert J. Jilek; Brian Campbell 002 (J. Comput. Aided Mol. Des., 2007)

Virtual Screening for R-Groups, including Predicted pIC50 Contributions, within Large Structural Databases, Using Topomer CoMFA. - Richard D. Cramer; Phillip Cruz; Gunther Stahl; William C. Curtiss; Brian Campbell 002; Brian B. Masek; Farhad Soltanshahi (J. Chem. Inf. Model., 2008)

Multistep Reaction Based De Novo Drug Design: Generating Synthetically Feasible Design Ideas. - Brian B. Masek; David S. Baker; Roman J. Dorfman; Karen DuBrucq; Victoria C. Francis; Stephan Nagy; Bree L. Richey; Farhad Soltanshahi (J. Chem. Inf. Model., 2016)