High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function. - Mu Gao; Peik Lund-Andersen; Alex Morehead; Sajid Mahmud; Chen Chen; Xiao Chen; Nabin Giri; Raj S. Roy; Farhan Quadir; T. Chad Effler; Ryan Prout; Subil Abraham; et al. (MLHPC@SC, 2021)

A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers. - Raj S. Roy; Farhan Quadir; Elham Soltanikazemi; Jianlin Cheng (Bioinform., 2022)

Multi-head attention-based U-Nets for predicting protein domain boundaries using 1D sequence features and 2D distance maps. - Sajid Mahmud; Zhiye Guo; Farhan Quadir; Jian Liu; Jianlin Cheng (BMC Bioinform., 2022)

DRLComplex: Reconstruction of protein quaternary structures using deep reinforcement learning. - Elham Soltanikazemi; Raj S. Roy; Farhan Quadir; Nabin Giri; Alex Morehead; Jianlin Cheng (CoRR, 2022)

Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. - Russell B. Davidson; Mark Coletti; Mu Gao; Bryan Piatkowski; Avinash Sreedasyam; Farhan Quadir; David J. Weston; Jeremy Schmutz; Jianlin Cheng; Jeffrey Skolnick; Jerry M. Parks; Ada Sedova (Bioinform., 2023)