Compression of DNA Sequences. - Stéphane Grumbach; Fariza Tahi (Data Compression Conference, 1993)

A New Challenge for Compression Algorithms: Genetic Sequences. - Stéphane Grumbach; Fariza Tahi (Inf. Process. Manag., 1994)

Automatic RNA Secondary Structure Prediction with a Comparative Approach. - Fariza Tahi; Manolo Gouy; Mireille Régnier (Comput. Chem., 2002)

A Fast Algorithm for NA Secondary Structure Prediction Including Pseudoknots. - Fariza Tahi; Stefan Engelen; Mireille Régnier (BIBE, 2003)

Towards a Mediation System Framework for Transparent Access to Largely Distributed Sources. The MediaGrid Project. - Christine Collet; Khalid Belhajjame; Gilles Bernot; Christophe Bobineau; Gennaro Bruno; Béatrice Finance; Fabrice Jouanot; Zoubida Kedad; David Laurent; Fariza Tahi; Genoveva Vargas-Solar; Tuyet-Trinh Vu; et al. (ICSNW, 2004)

An Open Problem in RNA Secondary Structure Prediction by the Comparative Approach. - Stefan Engelen; Fariza Tahi (METMBS, 2004)

P-dcfold or How to Predict all Kinds of Pseudoknots in Rna Secondary Structures. - Fariza Tahi; Stefan Engelen; Mireille Régnier (Int. J. Artif. Intell. Tools, 2005)

The Renal Physiome Project. - S. Randall Thomas; Fariza Tahi; Peter Harris; Andrew Lonie (ISBI, 2006)

Modeling and Simulation with Hybrid Functional Petri Nets of the Role of Interleukin-6 in Human Early Haematopoiesis. - Sylvie Troncale; Fariza Tahi; David Campard; Jean-Pierre Vannier; Janine Guespin (Pacific Symposium on Biocomputing, 2006)

Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences. - Stefan Engelen; Fariza Tahi (BMC Bioinform., 2007)

Modélisation et simulation de la rAgulation de l'hématopopièse précoce grâce aux réseaux de Petri hybrides fonctionnels. - Sylvie Troncale; Fariza Tahi; David Campard; Jean-Pierre Vannier (Tech. Sci. Informatiques, 2007)

OMIE: Ontology Mapping within an Interactive and Extensible Environment. - Amel Bouzeghoub; Abdeltif Elbyed; Fariza Tahi (DILS, 2008)

Behaviour Preservation of a Biological Regulatory Network when Embedded into a Larger Network. - Gilles Bernot; Fariza Tahi (Fundam. Informaticae, 2009)

ModuleOrganizer: detecting modules in families of transposable elements. - Sébastien Tempel; Christine Rousseau; Fariza Tahi; Jacques Nicolas (BMC Bioinform., 2010)

ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins. - Sébastien Tempel; Nicolas Pollet; Fariza Tahi (BMC Bioinform., 2012)

Towards a piRNA prediction using multiple kernel fusion and support vector machine. - Jocelyn Brayet; Farida Zehraoui; Laurence Jeanson-Leh; David Israeli; Fariza Tahi (Bioinform., 2014)

miRNAFold: a web server for fast miRNA precursor prediction in genomes. - Christophe Tav; Sébastien Tempel; Laurent Poligny; Fariza Tahi (Nucleic Acids Res., 2016)

Self-organizing maps with supervised layer. - Ludovic Platon; Farida Zehraoui; Fariza Tahi (WSOM, 2017)

Localized Multiple Sources Self-Organizing Map. - Ludovic Platon; Farida Zehraoui; Fariza Tahi (ICONIP (3), 2018)

IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection. - Ludovic Platon; Farida Zehraoui; Abdelhafid Bendahmane; Fariza Tahi (Bioinform., 2018)

Bi-objective integer programming for RNA secondary structure prediction with pseudoknots. - Audrey Legendre; Eric Angel; Fariza Tahi (BMC Bioinform., 2018)

RCPred: RNA complex prediction as a constrained maximum weight clique problem. - Audrey Legendre; Eric Angel; Fariza Tahi (BMC Bioinform., 2019)

BiORSEO: a bi-objective method to predict RNA secondary structures with pseudoknots using RNA 3D modules. - Louis Becquey; Eric Angel; Fariza Tahi (Bioinform., 2020)

RNANet: an automatically built dual-source dataset integrating homologous sequences and RNA structures. - Louis Becquey; Eric Angel; Fariza Tahi (Bioinform., 2021)

A Greedy Clustering Algorithm for Multiple Sequence Alignment. - Rabah Lebsir; Abdesslem Layeb; Fariza Tahi (Int. J. Cogn. Informatics Nat. Intell., 2021)

Prediction of Secondary Structure for Long Non-Coding RNAs using a Recursive Cutting Method based on Deep Learning. - Loïc Omnes; Eric Angel; Pierre Bartet; François Radvanyi; Fariza Tahi (BIBE, 2023)

C-RCPred: a multi-objective algorithm for interactive secondary structure prediction of RNA complexes integrating user knowledge and SHAPE data. - Mandy Ibéné; Audrey Legendre; Guillaume Postic; Eric Angel; Fariza Tahi (Briefings Bioinform., 2023)

IRSOM2: a web server for predicting bifunctional RNAs. - Guillaume Postic; Christophe Tav; Ludovic Platon; Farida Zehraoui; Fariza Tahi (Nucleic Acids Res., 2023)

RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality. - Clement Bernard; Guillaume Postic; Sahar Ghannay; Fariza Tahi (Briefings Bioinform., 2024)

Comparison and benchmark of deep learning methods for non-coding RNA classification. - Constance Creux; Farida Zehraoui; François Radvanyi; Fariza Tahi (PLoS Comput. Biol., 2024)