A Multimessage Capacity Region for Undirected Ring Networks. - S. M. Sadegh Tabatabaei Yazdi; Serap A. Savari; Farzad Farnoud; Gerhard Kramer (ISIT, 2007)

Reliable Broadcast of Safety Messages in Vehicular Ad Hoc Networks. - Farzad Farnoud; Shahrokh Valaee (INFOCOM, 2009)

Small-sample distribution estimation over sticky channels. - Farzad Farnoud; Olgica Milenkovic; Narayana P. Santhanam (ISIT, 2009)

A graphical model for computing the minimum cost transposition distance. - Farzad Farnoud; Chien-Yu Chen 005; Olgica Milenkovic; Navin Kashyap (ITW, 2010)

On the multimessage capacity region for undirected ring networks. - S. M. Sadegh Tabatabaei Yazdi; Serap A. Savari; Gerhard Kramer; Kelli Carlson; Farzad Farnoud (IEEE Trans. Inf. Theory, 2010)

Decomposing permutations via cost-constrained transpositions. - Farzad Farnoud; Olgica Milenkovic (ISIT, 2011)

Alternating Markov chains for distribution estimation in the presence of errors. - Farzad Farnoud; Narayana P. Santhanam; Olgica Milenkovic (ISIT, 2012)

Rank modulation for translocation error correction. - Farzad Farnoud; Vitaly Skachek; Olgica Milenkovic (ISIT, 2012)

Nonuniform Vote Aggregation Algorithms - Farzad Farnoud; Behrouz Touri; Olgica Milenkovic (CoRR, 2012)

A Novel Distance-Based Approach to Constrained Rank Aggregation - Farzad Farnoud; Olgica Milenkovic; Behrouz Touri (CoRR, 2012)

Sorting of Permutations by Cost-Constrained Transpositions. - Farzad Farnoud; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2012)

A general framework for distributed vote aggregation. - Behrouz Touri; Farzad Farnoud; Angelia Nedic; Olgica Milenkovic (ACC, 2013)

Gene prioritization via weighted Kendall rank aggregation. - Minji Kim 007; Fardad Raisali; Farzad Farnoud; Olgica Milenkovic (CAMSAP, 2013)

MetaPar: Metagenomic sequence assembly via iterative reclassification. - Minji Kim 011; Jonathan G. Ligo; Amin Emad; Farzad Farnoud; Olgica Milenkovic; Venugopal V. Veeravalli (GlobalSIP, 2013)

Building consensus via iterative voting. - Farzad Farnoud Hassanzadeh; Eitan Yaakobi; Behrouz Touri; Olgica Milenkovic; Jehoshua Bruck (ISIT, 2013)

Weighted rank aggregation via relaxed integer programming. - Fardad Raisali; Farzad Farnoud Hassanzadeh; Olgica Milenkovic (ISIT, 2013)

Aggregating rankings with positional constraints. - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (ITW, 2013)

Computing Similarity Distances Between Rankings. - Lili Su; Farzad Farnoud; Olgica Milenkovic (CoRR, 2013)

Error-Correction in Flash Memories via Codes in the Ulam Metric. - Farzad Farnoud; Vitaly Skachek; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2013)

Multipermutation codes in the Ulam metric. - Farzad Farnoud; Olgica Milenkovic (ISIT, 2014)

Codes correcting erasures and deletions for rank modulation. - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Jehoshua Bruck (ISIT, 2014)

Single-deletion-correcting codes over permutations. - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Frederic Sala; Jehoshua Bruck; Lara Dolecek (ISIT, 2014)

Similarity distances between permutations. - Lili Su; Farzad Farnoud; Olgica Milenkovic (ISIT, 2014)

Rate-Distortion for Ranking with Incomplete Information. - Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (CoRR, 2014)

The Capacity of String-Replication Systems. - Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (CoRR, 2014)

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories. - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (IEEE J. Sel. Areas Commun., 2014)

An Axiomatic Approach to Constructing Distances for Rank Comparison and Aggregation. - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2014)

A stochastic model for genomic interspersed duplication. - Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (ISIT, 2015)

HyDRA: gene prioritization via hybrid distance-score rank aggregation. - Minji Kim 007; Farzad Farnoud; Olgica Milenkovic (Bioinform., 2015)

On the duplication distance of binary strings. - Noga Alon; Jehoshua Bruck; Farzad Farnoud; Siddharth Jain (ISIT, 2016)

The capacity of some Pólya string models. - Ohad Elishco; Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (ISIT, 2016)

MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression. - Minji Kim 011; Xiejia Zhang; Jonathan G. Ligo; Farzad Farnoud; Venugopal V. Veeravalli; Olgica Milenkovic (BMC Bioinform., 2016)

Approximate sorting of data streams with limited storage. - Farzad Farnoud; Eitan Yaakobi; Jehoshua Bruck (J. Comb. Optim., 2016)

Codes Correcting Erasures and Deletions for Rank Modulation. - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Frederic Sala; Jehoshua Bruck; Lara Dolecek (IEEE Trans. Inf. Theory, 2016)

Bounds for Permutation Rate-Distortion. - Farzad Farnoud Hassanzadeh; Moshe Schwartz 001; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2016)

The Capacity of String-Duplication Systems. - Farzad Farnoud Hassanzadeh; Moshe Schwartz 001; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2016)

Reconciling similar sets. - Ryan Gabrys; Farzad Farnoud Hassanzadeh (Allerton, 2017)

Noise and uncertainty in string-duplication systems. - Siddharth Jain; Farzad Farnoud Hassanzadeh; Moshe Schwartz 001; Jehoshua Bruck (ISIT, 2017)

Computing similarity distances between rankings. - Farzad Farnoud Hassanzadeh; Olgica Milenkovic; Gregory J. Puleo; Lili Su (Discret. Appl. Math., 2017)

Duplication Distance to the Root for Binary Sequences. - Noga Alon; Jehoshua Bruck; Farzad Farnoud Hassanzadeh; Siddharth Jain (IEEE Trans. Inf. Theory, 2017)

Capacity and Expressiveness of Genomic Tandem Duplication. - Siddharth Jain; Farzad Farnoud Hassanzadeh; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2017)

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms. - Siddharth Jain; Farzad Farnoud Hassanzadeh; Moshe Schwartz 001; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2017)

Evolution of N-Gram Frequencies Under Duplication and Substitution Mutations. - Hao Lou; Moshe Schwartz 001; Farzad Farnoud Hassanzadeh (ISIT, 2018)

Finite-Time Behavior of k-mer Frequencies and Waiting Times in Noisy-Duplication Systems. - Hao Lou; Farzad Farnoud Hassanzadeh (ACSSC, 2019)

Solving the Maximum Independent Set Problem using Coupled Relaxation Oscillators. - Mohammad Khairul Bashar; Richard Hrdy; Antik Mallick; Farzad Farnoud Hassanzadeh; Nikhil Shukla (DRC, 2019)

Reconciling Similar Sets of Data. - Ryan Gabrys; Farzad Farnoud (IEEE Trans. Commun., 2019)

The Entropy Rate of Some Pólya String Models. - Ohad Elishco; Farzad Farnoud Hassanzadeh; Moshe Schwartz 001; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2019)

Estimation of duplication history under a stochastic model for tandem repeats. - Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (BMC Bioinform., 2019)

Rank Aggregation via Heterogeneous Thurstone Preference Models. - Tao Jin 002; Pan Xu 002; Quanquan Gu; Farzad Farnoud (AAAI, 2020)

Efficient Search of Circular Repeats and MicroDNA Reintegration in DNA Sequences. - Yiming Wang; Hao Lou; Pankaj Kumar; Anindya Dutta; Farzad Farnoud (BIBE, 2020)

Coding for Optimized Writing Rate in DNA Storage. - Siddharth Jain; Farzad Farnoud; Moshe Schwartz 001; Jehoshua Bruck (ISIT, 2020)

Error-correcting Codes for Short Tandem Duplication and Substitution Errors. - Yuanyuan Tang; Farzad Farnoud (ISIT, 2020)

Evolution of $k$ -Mer Frequencies and Entropy in Duplication and Substitution Mutation Systems. - Hao Lou; Moshe Schwartz 001; Jehoshua Bruck; Farzad Farnoud (IEEE Trans. Inf. Theory, 2020)

Single-Error Detection and Correction for Duplication and Substitution Channels. - Yuanyuan Tang; Yonatan Yehezkeally; Moshe Schwartz 001; Farzad Farnoud (IEEE Trans. Inf. Theory, 2020)

Asymptotic Analysis of Data Deduplication with a Constant Number of Substitutions. - Hao Lou; Farzad Farnoud Hassanzadeh (ISIT, 2021)

Error-correcting codes for short tandem duplications and at most $p$ substitutions. - Yuanyuan Tang; Hao Lou; Farzad Farnoud (ISIT, 2021)

Non-binary Codes for Correcting a Burst of at Most 2 Deletions. - Shuche Wang; Jin Sima; Farzad Farnoud (ISIT, 2021)

Correcting deletion errors in DNA data storage with enzymatic synthesis. - Yuanyuan Tang; Farzad Farnoud (ITW, 2021)

Error-Correcting Codes for Noisy Duplication Channels. - Yuanyuan Tang; Farzad Farnoud (IEEE Trans. Inf. Theory, 2021)

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons. - Yue Wu; Tao Jin 002; Hao Lou; Pan Xu 002; Farzad Farnoud; Quanquan Gu (AISTATS, 2022)

Permutation Codes for Correcting a Burst of at Most $t$ Deletions. - Shuche Wang; Yuanyuan Tang; Ryan Gabrys; Farzad Farnoud (Allerton, 2022)

Universal Compression of Large Alphabets with Constrained Compressors. - Hao Lou; Farzad Farnoud (ISIT, 2022)

Correcting multiple short duplication and substitution errors. - Yuanyuan Tang; Shuche Wang; Ryan Gabrys; Farzad Farnoud (ISIT, 2022)

Active Ranking without Strong Stochastic Transitivity. - Hao Lou; Tao Jin 002; Yue Wu; Pan Xu 002; Quanquan Gu; Farzad Farnoud (NeurIPS, 2022)

Data Deduplication With Random Substitutions. - Hao Lou; Farzad Farnoud (IEEE Trans. Inf. Theory, 2022)

Error-Correcting Codes for Short Tandem Duplication and Edit Errors. - Yuanyuan Tang; Farzad Farnoud (IEEE Trans. Inf. Theory, 2022)

A Statistical Analysis of Duplication Errors in the Nanopore Sequencing Channel. - Sarvin Motamen; Hao Lou; Farzad Farnoud (ACSSC, 2023)

Constrained Code for Data Storage in DNA via Nanopore Sequencing. - Kallie Whritenour; Mete Civelek; Farzad Farnoud (ACSSC, 2023)

Linial's Algorithm and Systematic Deletion-Correcting Codes. - Yuting Li; Farzad Farnoud (ISIT, 2023)

Borda Regret Minimization for Generalized Linear Dueling Bandits. - Yue Wu; Tao Jin 002; Hao Lou; Farzad Farnoud; Quanquan Gu (CoRR, 2023)

Low-Redundancy Codes for Correcting Multiple Short-Duplication and Edit Errors. - Yuanyuan Tang; Shuche Wang; Hao Lou; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Inf. Theory, 2023)

Variance-aware Regret Bounds for Stochastic Contextual Dueling Bandits. - Qiwei Di; Tao Jin 002; Yue Wu; Heyang Zhao; Farzad Farnoud; Quanquan Gu (ICLR, 2024)

Borda Regret Minimization for Generalized Linear Dueling Bandits. - Yue Wu; Tao Jin 002; Qiwei Di; Hao Lou; Farzad Farnoud; Quanquan Gu (ICML, 2024)

Asymptotically Optimal Codes Correcting One Substring Edit. - L. Yuting; Yuanyuan Tang; Hao Lou; Ryan Gabrys; Farzad Farnoud (ISIT, 2024)

Non-Binary Codes for Correcting a Burst of at Most t Deletions. - Shuche Wang; Yuanyuan Tang; Jin Sima; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Inf. Theory, 2024)

Correcting a Substring Edit Error of Bounded Length. - Yuanyuan Tang; Sarvin Motamen; Hao Lou; Kallie Whritenour; Shuche Wang; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Commun., 2025)

Linear List Decodable Edit-Correcting Codes with Rate Approaching 1. - Yuting Li; Ryan Gabrys; Farzad Farnoud (CoRR, 2025)

Asymptotically Optimal Codes Correcting One Substring Edit. - Yuting Li; Yuanyuan Tang; Hao Lou; Ryan Gabrys; Farzad Farnoud (CoRR, 2025)

Optimal Codes Correcting a Substring Edit. - Yuting Li; Yuanyuan Tang; Hao Lou; Ryan Gabrys; Farzad Farnoud Hassanzadeh (IEEE Trans. Inf. Theory, 2025)