Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances. - Farzaneh Sarafraz; James M. Eales; Reza Mohammadi; Jonathan E. Dickerson; David Robertson; Goran Nenadic (BioNLP@HLT-NAACL (Shared Task), 2009)

Using SVMs with the Command Relation features to identify negated events in biomedical literature. - Farzaneh Sarafraz; Goran Nenadic (NeSp-NLP@ACL, 2010)

Identification of negated regulation events in the literature: exploring the feature space. - Farzaneh Sarafraz; Goran Nenadic (Semantic Mining in Biomedicine, 2010)

Medication information extraction with linguistic pattern matching and semantic rules. - Irena Spasic; Farzaneh Sarafraz; John A. Keane; Goran Nenadic (J. Am. Medical Informatics Assoc., 2010)

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. - Daniel G. Jamieson; Martin Gerner; Farzaneh Sarafraz; Goran Nenadic; David L. Robertson (Database J. Biol. Databases Curation, 2012)

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. - Martin Gerner; Farzaneh Sarafraz; Casey M. Bergman; Goran Nenadic (Bioinform., 2012)

Finding conflicting statements in the biomedical literature. - Farzaneh Sarafraz (2012)