TransMarker: Unveiling dynamic network biomarkers in cancer progression through cross-state graph alignment and optimal transport. - Fatemeh Keikha; Chuanyuan Wang; Zhixia Yang; Zhi-Ping Liu (PLoS Comput. Biol., 2025)

MTPrior: A Multi-Task Hierarchical Graph Embedding Framework for Prioritizing Hepatocellular Carcinoma-Associated Genes and Long Noncoding RNAs. - Fatemeh Keikha; Zhi-Ping Liu (IEEE J. Biomed. Health Informatics, 2026)