Clustering Based Identification of SARS-CoV-2 Subtypes. - Andrew Melnyk; Fatemeh Mohebbi; Sergey Knyazev; Bikram Sahoo; Roya Hosseini; Pavel Skums; Alex Zelikovsky; Murray Patterson (ICCABS, 2020)

From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering. - Andrew Melnyk; Fatemeh Mohebbi; Sergey Knyazev; Bikram Sahoo; Roya Hosseini; Pavel Skums; Alex Zelikovsky; Murray Patterson (J. Comput. Biol., 2021)

SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework. - Pavel Skums; Fatemeh Mohebbi; Vyacheslav Tsyvina; Pelin Icer; Sumathi Ramachandran; Yury Khudyakov (RECOMB, 2022)

Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes. - Fatemeh Mohebbi; Alexander Zelikovsky; Serghei Mangul; Gerardo Chowell; Pavel Skums (RECOMB, 2024)