ArrayNorm: comprehensive normalization and analysis of microarray data. - Roland Pieler; Fátima Sánchez-Cabo; Hubert Hackl; Gerhard G. Thallinger; Zlatko Trajanoski (Bioinform., 2004)

A fully Bayesian model to cluster gene-expression profiles. - C. Vogl; Fátima Sánchez-Cabo; Gernot Stocker; Simon J. Hubbard; Olaf Wolkenhauer; Zlatko Trajanoski (ECCB/JBI, 2005)

A quantization method based on threshold optimization for microarray short time series. - Barbara Di Camillo; Fátima Sánchez-Cabo; Gianna Toffolo; Sreekumaran K. Nair; Zlatko Trajanoski; Claudio Cobelli (BMC Bioinform., 2005)

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. - Bernhard Mlecnik; Marcel Scheideler; Hubert Hackl; Jürgen Hartler; Fátima Sánchez-Cabo; Zlatko Trajanoski (Nucleic Acids Res., 2005)

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. - Johannes Rainer; Fátima Sánchez-Cabo; Gernot Stocker; Alexander Sturn; Zlatko Trajanoski (Nucleic Acids Res., 2006)

Unbiased comparison of alignment tools for splice junction detection from RNA-Seq data. - Alberto Gatto; Fátima Sánchez-Cabo; Carlos Torroja Fungairino; Enrique Lara Pezzi (IWBBIO, 2013)

GOplot: an R package for visually combining expression data with functional analysis. - Wencke Walter; Fátima Sánchez-Cabo; Mercedes Ricote (Bioinform., 2015)

ATtRACT - a database of RNA-binding proteins and associated motifs. - Girolamo Giudice; Fátima Sánchez-Cabo; Carlos Torroja Fungairino; Enrique Lara Pezzi (Database J. Biol. Databases Curation, 2016)

dSreg: a Bayesian model to integrate changes in splicing and RNA-binding protein activity. - Carlos Martí-Gómez; Enrique Lara Pezzi; Fátima Sánchez-Cabo (Bioinform., 2020)

Deep generative models in single-cell omics. - Inés Rivero-García; Miguel Torres; Fátima Sánchez-Cabo (Comput. Biol. Medicine, 2024)

Variable selection for nonlinear dimensionality reduction of biological datasets through bootstrapping of correlation networks. - David G. Aragones; Miguel Palomino-Segura; Jon Sicilia; Georgiana Crainiciuc; Iván Ballesteros; Fátima Sánchez-Cabo; Andrés Hidalgo; Gabriel Fernández Calvo (Comput. Biol. Medicine, 2024)

SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks. - Diego Mañanes; Inés Rivero-García; Carlos Relaño; Miguel Torres; David Sancho; Daniel Jimenez-Carretero; Carlos Torroja Fungairino; Fátima Sánchez-Cabo (Bioinform., 2024)

Virtual-Cardio-Drug: Ai-Powered Sbvs for Cardiovascular Drug Discovery. - Álvaro Serrano Navarro; Juan Ignacio Alvarez Arenas; Alberto González Calatayud; Jose Antonio Enríquez; Fernando Martínez De Benito; Fátima Sánchez-Cabo (CBMS, 2025)