ROSO: optimizing oligonucleotide probes for microarrays. - Nancie Reymond; Hubert Charles; Laurent Duret; Federica Calevro; Guillaume Beslon; Jean-Michel Fayard (Bioinform., 2004)

SITRANS: a Web Information System for Microarray Experiments. - Frédérique Laforest; Anne Tchounikine; Tarak Chaari; Hubert Charles; Federica Calevro (MIE, 2005)

CycADS: an annotation database system to ease the development and update of BioCyc databases. - Augusto F. Vellozo; Amélie S. Véron; Patrice Baa-Puyoulet; Jaime Huerta-Cepas; Ludovic Cottret; Gérard Febvay; Federica Calevro; Yvan Rahbé; Angela E. Douglas; Toni Gabaldón; Marie-France Sagot; Hubert Charles; et al. (Database J. Biol. Databases Curation, 2011)

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. - Patrice Baa-Puyoulet; Nicolas Parisot; Gérard Febvay; Jaime Huerta-Cepas; Augusto F. Vellozo; Toni Gabaldón; Federica Calevro; Hubert Charles; Stefano Colella (Database J. Biol. Databases Curation, 2016)

Data-Driven Gene Regulatory Network Inference Based on Classification Algorithms. - Sergio Peignier; Pauline Schmitt; Federica Calevro (ICTAI, 2019)

Data-driven Gene Regulatory Networks Inference Based on Classification Algorithms. - Sergio Peignier; Pauline Schmitt; Federica Calevro (Int. J. Artif. Intell. Tools, 2021)

Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians. - Sergio Peignier; Virginie Lacotte; Marie-Gabrielle Duport; Patrice Baa-Puyoulet; Jean-Christophe Simon; Federica Calevro; Abdelaziz Heddi; Pedro da Silva (Remote. Sens., 2023)

Ensemble Learning Based Gene Regulatory Network Inference. - Sergio Peignier; Baptiste Sorin; Federica Calevro (Int. J. Artif. Intell. Tools, 2023)

Decoding Gene Regulation in Alzheimer's Disease with Transfer Learning and Explainable Machine Learning. - Sergio Peignier; Amanda Lo Van; Yann Meunier; Elea Pauliat; Matis Zouari; Federica Calevro (CMSB, 2025)