Combining Supervised and Unsupervised Methods to Support Early Diagnosis of Hepatocellular Carcinoma. - Federica Ciocchetta; Rossana Dell'Anna; Francesca Demichelis; Amar Paul Dhillon; Alberto Quaglia; Andrea Sboner (AIME, 2003)

Knowledge discovery in support of early diagnosis of hepatocellular carcinoma. - Federica Ciocchetta; Rossana Dell'Anna; Francesca Demichelis; Andrea Sboner; Amar Paul Dhillon; Arjun Dhillon; Andrew Godfrey; Alberto Quaglia (IJCNN, 2003)

Modeling Kohn Interaction Maps with Beta-Binders: An Example. - Federica Ciocchetta; Corrado Priami; Paola Quaglia (Trans. Comp. Sys. Biology, 2005)

Biological Transactions for Quantitative Models. - Federica Ciocchetta; Corrado Priami (MeCBIC@ICALP, 2006)

Modelling Yeast Pre-rRNA Processing. - Federica Ciocchetta; Jane Hillston; Martin Kos; David Tollervey (CMSB, 2007)

Bio-PEPA: An Extension of the Process Algebra PEPA for Biochemical Networks. - Federica Ciocchetta; Jane Hillston (FBTC@CONCUR, 2007)

Integrated Analysis from Abstract Stochastic Process Algebra Models. - Jane Hillston; Federica Ciocchetta; Adam Duguid; Stephen Gilmore (CMSB, 2008)

Process Algebras in Systems Biology. - Federica Ciocchetta; Jane Hillston (SFM, 2008)

Some Investigations Concerning the CTMC and the ODE Model Derived From Bio-PEPA. - Federica Ciocchetta; Andrea Degasperi; Jane Hillston; Muffy Calder (FBTC@ICALP, 2008)

Modelling Biological Compartments in Bio-PEPA. - Federica Ciocchetta; Maria Luisa Guerriero (MeCBIC, 2008)

Integrated Simulation and Model-Checking for the Analysis of Biochemical Systems. - Federica Ciocchetta; Stephen Gilmore; Maria Luisa Guerriero; Jane Hillston (PASM@EPEW, 2008)

An Automatic Translation of SBML into Beta-Binders. - Federica Ciocchetta; Corrado Priami; Paola Quaglia (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Modelling co-transcriptional cleavage in the synthesis of yeast pre-rRNA. - Federica Ciocchetta; Jane Hillston; Martin Kos; David Tollervey (Theor. Comput. Sci., 2008)

The BlenX Language with Biological Transactions. - Federica Ciocchetta (Trans. Comp. Sys. Biology, 2008)

Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network. - Ozgur E. Akman; Federica Ciocchetta; Andrea Degasperi; Maria Luisa Guerriero (CMSB, 2009)

Modelling and analysis of the NF-$kappa$B pathway in Bio-PEPA. - Federica Ciocchetta; Andrea Degasperi; John K. Heath; Jane Hillston (Formal Methods in Molecular Biology, 2009)

The Bio-PEPA Tool Suite. - Federica Ciocchetta; Adam Duguid; Stephen Gilmore; Maria Luisa Guerriero; Jane Hillston (QEST, 2009)

A compartmental model of the cAMP/PKA/MAPK pathway in Bio-PEPA - Federica Ciocchetta; Adam Duguid; Maria Luisa Guerriero (MeCBIC, 2009)

Bio-PEPA for Epidemiological Models. - Federica Ciocchetta; Jane Hillston (PASM@MASCOTS, 2009)

Bio-PEPA: A framework for the modelling and analysis of biological systems. - Federica Ciocchetta; Jane Hillston (Theor. Comput. Sci., 2009)

Bio-PEPA with Events. - Federica Ciocchetta (Trans. Comp. Sys. Biology, 2009)

A Hierarchy of Networks Spanning from Individual Organisms to Ecological Landscapes. - Ferenc Jordán; Gabriella Baranyi; Federica Ciocchetta (Network Science, 2010)

Investigating modularity in the analysis of process algebra models of biochemical systems - Federica Ciocchetta; Maria Luisa Guerriero; Jane Hillston (FBTC, 2010)

Modelling and Analysis of the NF-kappaB Pathway in Bio-PEPA. - Federica Ciocchetta; Andrea Degasperi; John K. Heath; Jane Hillston (Trans. Comp. Sys. Biology, 2010)

A semi-quantitative equivalence for abstracting from fast reactions - Vashti Galpin; Jane Hillston; Federica Ciocchetta (CompMod, 2011)

Social and landscape effects on food webs: a multi-level network simulation model. - Marco Scotti; Federica Ciocchetta; Ferenc Jordán (J. Complex Networks, 2013)