An ontology-based approach to improve data querying and organization of Alzheimer's Disease data. - Ivan Arisi; Paola Bertolazzi; Eleonora Cappelli; Federica Conte; Fabio Cumbo; Giulia Fiscon; Michele Sonnessa; Francesco Taglino (BIBM, 2018)

MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis. - Valerio Licursi; Federica Conte; Giulia Fiscon; Paola Paci (BMC Bioinform., 2019)

Applications of Nonlinear Programming to the Optimization of Fractionated Protocols in Cancer Radiotherapy. - Alessandro Bertuzzi; Federica Conte; Federico Papa; Carmela Sinisgalli (Inf., 2020)

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19. - Giulia Fiscon; Federica Conte; Lorenzo Farina; Paola Paci (PLoS Comput. Biol., 2021)

StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition. - Federica Conte; Federico Papa; Paola Paci; Lorenzo Farina (BMC Bioinform., 2022)

A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes. - Federica Conte; Pasquale Sibilio; Giulia Fiscon; Paola Paci (Symmetry, 2022)

Network-based analysis to uncover drug-induced adverse side-effects. - Alessio Funari; Paola Paci; Federica Conte (BIBM, 2023)

An ontology-based approach for modelling and querying Alzheimer's disease data. - Francesco Taglino; Fabio Cumbo; Giulia Antognoli; Ivan Arisi; Mara D'Onofrio; Federico Perazzoni; Roger Voyat; Giulia Fiscon; Federica Conte; Marco Canevelli; Giuseppe Bruno; Patrizia Mecocci; et al. (BMC Medical Informatics Decis. Mak., 2023)

Unveiling drug-induced side effects through network-based analysis: an update. - Alessio Funari; Federica Conte; Paola Paci (BIBM, 2024)

Beyond the network-based multi-omics data integration in COPD: a pathway-centric analysis. - Pasquale Sibilio; Federica Conte; Paola Paci (BIBM, 2024)