Clustering of proximal sequence space for the identification of protein families. - Federico Abascal; Alfonso Valencia (Bioinform., 2002)

ProtTest: selection of best-fit models of protein evolution. - Federico Abascal; Rafael Zardoya; David Posada (Bioinform., 2005)

GenDecoder: genetic code prediction for metazoan mitochondria. - Federico Abascal; Rafael Zardoya; David Posada (Nucleic Acids Res., 2006)

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. - Federico Abascal; Pedro Carmona-Saez; José María Carazo; Alberto D. Pascual-Montano (Bioinform., 2008)

CentrosomeDB: a human centrosomal proteins database. - Rubén Nogales-Cadenas; Federico Abascal; Javier Díez-Pérez; José María Carazo; Alberto D. Pascual-Montano (Nucleic Acids Res., 2009)

Accurate Selection of Models of Protein Evolution. - Mateus Patricio; Federico Abascal; Rafael Zardoya; David Posada (IWPACBB, 2010)

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. - Federico Abascal; Rafael Zardoya; Maximilian J. Telford (Nucleic Acids Res., 2010)

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals. - Federico Abascal; Michael L. Tress; Alfonso Valencia (Bioinform., 2015)

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. - Federico Abascal; Iakes Ezkurdia; Juan Rodriguez-Rivas; José Manuel Rodriguez; Angela del Pozo; Jesús Vázquez; Alfonso Valencia; Michael L. Tress (PLoS Comput. Biol., 2015)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)