AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts. - Giovanni Lavorgna; Riccardo Triunfo; Federico Andrea Santoni; Ugo Orfanelli; Sara Noci; Alessandro Bulfone; Gianluigi Zanetti; Giorgio Casari (Nucleic Acids Res., 2005)

Biodoop: Bioinformatics on Hadoop. - Simone Leo; Federico Andrea Santoni; Gianluigi Zanetti (ICPP Workshops, 2009)

Deciphering the Code for Retroviral Integration Target Site Selection. - Federico Andrea Santoni; Oliver Hartley; Jeremy Luban (PLoS Comput. Biol., 2010)

CATCHing putative causative variants in consanguineous families. - Federico Andrea Santoni; Periklis Makrythanasis; Stylianos E. Antonarakis (BMC Bioinform., 2015)

CoverageMaster: comprehensive CNV detection and visualization from NGS short reads for genetic medicine applications. - Melivoia Rapti; Yassine Zouaghi; Jenny Meylan; Emmanuelle Ranza; Stylianos E. Antonarakis; Federico Andrea Santoni (Briefings Bioinform., 2022)