Optimizing Reference Gene Set for Inter-Chip Normalization Using Genetic Algorithm. - Fei Li 004; Wenjian Xu; Peng Li; Xiaochen Bo; Yuxing Peng 001 (BMEI, 2009)

Dynamic Propagation Properties of Virus-Host Protein Interaction Network. - Fei Li 004; Yuxing Peng 001; Wenjian Xu; Peng Li; Xiaochen Bo (IJCBS, 2009)

Towards a Comprehensive HBV-Human Interaction Map. - Fei Li 004; Yuxing Peng 001; Wenjian Xu; Guangchuang Yu; Peng Li; Xiaochen Bo; Shengqi Wang (IJCBS, 2009)

PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. - Fei Li 004; Peng Li; Wenjian Xu; Yuxing Peng 001; Xiaochen Bo; Shengqi Wang (Bioinform., 2010)

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. - Guangchuang Yu; Fei Li 004; Yide Qin; Xiaochen Bo; Yibo Wu; Shengqi Wang (Bioinform., 2010)

Topology aware functional similarity of protein interaction networks based on gene ontology. - Fei Li 004; Xiuliang Cui; Dafei Xie; Xiaochen Bo; Shengqi Wang (EMBC, 2011)

Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network. - Zhenpeng Li; Fei Li 004; Ming Ni; Peng Li; Xiaochen Bo; Shengqi Wang (BMC Syst. Biol., 2011)

Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis. - Zhenpeng Li; Xiuliang Cui; Fei Li 004; Peng Li; Ming Ni; Shengqi Wang; Xiaochen Bo (Bioinform., 2013)

Predicting drug side effects based on link prediction in bipartite network. - Yifu Luo; Qijun Liu; Wenjian Wu; Fei Li 004; Xiaochen Bo (BMEI, 2014)

ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO. - Ming Ni; Fuqiang Ye; Juanjuan Zhu; Zongwei Li; Shuai Yang; Bite Yang; Lu Han; Yongge Wu; Ying Chen; Fei Li 004; Shengqi Wang; Xiaochen Bo (Bioinform., 2014)

EHFPI: a database and analysis resource of essential host factors for pathogenic infection. - Yang Liu 273; Dafei Xie; Lu Han; Hui Bai; Fei Li 004; Shengqi Wang; Xiaochen Bo (Nucleic Acids Res., 2015)

RevEcoR: an R package for the reverse ecology analysis of microbiomes. - Yang Cao; Yuanyuan Wang; Xiaofei Zheng; Fei Li 004; Xiaochen Bo (BMC Bioinform., 2016)

ICM: a web server for integrated clustering of multi-dimensional biomedical data. - Song He; Haochen He; Wenjian Xu; Xin Huang 005; Shuai Jiang; Fei Li 004; Fuchu He; Xiaochen Bo (Nucleic Acids Res., 2016)

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. - Wenjian Xu; Yang Cao; Ziwei Xie; Haochen He; Song He; Hao Hong; Xiaochen Bo; Fei Li 004 (BMC Bioinform., 2017)

Learning Environmental Sounds with Multi-scale Convolutional Neural Network. - Boqing Zhu; Changjian Wang; Feng Liu; Jin Lei; Zhen Huang 006; Yuxing Peng 001; Fei Li 004 (IJCNN, 2018)