Analysis on relationship between extreme pathways and correlated reaction sets. - Yanping Xi; Yi-Ping Phoebe Chen; Ming Cao 005; Weirong Wang; Fei Wang 017 (BMC Bioinform., 2009)

Comparative study of computational methods to detect the correlated reaction sets in biochemical networks. - Yanping Xi; Yi-Ping Phoebe Chen; Chen Qian; Fei Wang 017 (Briefings Bioinform., 2011)

Comparison on extreme pathways reveals nature of different biological processes. - Yanping Xi; Yue Zhao; Li Wang; Fei Wang 017 (BMC Syst. Biol., 2014)

FlyVar: a database for genetic variation in Drosophila melanogaster. - Fei Wang 017; Lichun Jiang; Yong Chen 016; Nele A. Haelterman; Hugo J. Bellen; Rui Chen 013 (Database J. Biol. Databases Curation, 2015)

A fast read alignment method based on seed-and-vote for next generation sequencing. - Song Liu; Yi Wang; Fei Wang 017 (BMC Bioinform., 2016)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. - Yong Chen 016; Li Zhao; Yi Wang; Ming Cao 005; Violet Gelowani; Mingchu Xu; Smriti A. Agrawal; Yumei Li 007; Stephen P. Daiger; Richard A. Gibbs; Fei Wang 017; Rui Chen 013 (BMC Bioinform., 2017)

A study on fast calling variants from next-generation sequencing data using decision tree. - Zhentang Li; Yi Wang; Fei Wang 017 (BMC Bioinform., 2018)

SSBER: removing batch effect for single-cell RNA sequencing data. - Yin Zhang; Fei Wang 017 (BMC Bioinform., 2021)

scPreGAN, a deep generative model for predicting the response of single-cell expression to perturbation. - Xiajie Wei; Jiayi Dong; Fei Wang 017 (Bioinform., 2022)

scSemiAE: a deep model with semi-supervised learning for single-cell transcriptomics. - Jiayi Dong; Yin Zhang; Fei Wang 017 (BMC Bioinform., 2022)

GROD: Joint Inference of Gene Regulatory Networks and Data Imputation in Single-Cell RNA Sequencing with Temporal Consideration. - Jiayi Dong; Fei Wang 017 (BIBM, 2023)

stDiff: a diffusion model for imputing spatial transcriptomics through single-cell transcriptomics. - Kongming Li; Jiahao Li; Yuhao Tao; Fei Wang 017 (Briefings Bioinform., 2024)

Deep Learning in Gene Regulatory Network Inference: A Survey. - Jiayi Dong; Jiahao Li; Fei Wang 017 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)