IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. - Feifei Cui; Quan Zou 001; Qin Ma 003; Leyi Wei; Jijun Tang; Dariusz Mrozek (IEEE Access, 2021)

Anticancer peptides prediction with deep representation learning features. - Zhibin Lv; Feifei Cui; Quan Zou 001; Lichao Zhang; Lei Xu (Briefings Bioinform., 2021)

Critical downstream analysis steps for single-cell RNA sequencing data. - Zilong Zhang; Feifei Cui; Chen Lin 001; Lingling Zhao; Chunyu Wang 002; Quan Zou 001 (Briefings Bioinform., 2021)

Computational biology and chemistry Special section editorial: Computational analyses for miRNA. - Feifei Cui; Murong Zhou; Quan Zou 001 (Comput. Biol. Chem., 2021)

Dielectric Properties of Lunar Materials at the Chang'e-4 Landing Site. - Jialong Lai; Feifei Cui; Yi Xu 010; Chaofei Liu; Ling Zhang 006 (Remote. Sens., 2021)

webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. - Zilong Zhang; Feifei Cui; Wei Su; Lijun Dou; Anqi Xu; Chen Cao 002; Quan Zou 001 (Bioinform., 2022)

Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. - Zilong Zhang; Feifei Cui; Chen Cao 002; Qingsuo Wang; Quan Zou 001 (Comput. Biol. Medicine, 2022)

webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. - Chen Cao 002; Jianhua Wang; Devin Kwok; Feifei Cui; Zilong Zhang; Da Zhao; Mulin Jun Li; Quan Zou 001 (Nucleic Acids Res., 2022)

AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies. - Ruiqi Liu; Zilong Zhang; Xiuhao Fu; Shankai Yan; Feifei Cui (BIBM, 2023)

Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. - Yunyun Su; Feifei Cui; Shiyu Yan; Quan Zou 001; Chen Cao 002; Zilong Zhang (BIBM, 2023)

BEES: A New Acoustic Task for Blended Emotion Estimation in Speech. - Xingfeng Li 001; Xiaohan Shi; Yuke Si; Zilong Zhang; Feifei Cui; Yongwei Li; Yang Liu; Masashi Unoki; Masato Akagi (APSIPA, 2024)

RNASite: A one-stop tool website that integrates multiple RNA modification site databases and servers. - Jiahao Yuan; Xingfeng Li 001; Zilong Zhang; Qingchen Zhang 001; Quan Zou 001; Feifei Cui (BIBM, 2024)

BMPCD: A Pan-Cancer Detection Method Base on Learning Cross-Domain Feature. - Dongmei He; Xin Yang; Zilong Zhang; Feifei Cui; Shankai Yan (ICCBB, 2024)

MultiFeatVotPIP: a voting-based ensemble learning framework for predicting proinflammatory peptides. - Chaorui Yan; Aoyun Geng; Zhuoyu Pan; Zilong Zhang; Feifei Cui (Briefings Bioinform., 2024)

PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioning. - Zheyu Zhou; Cuilin Xiao; Jinfen Yin; Jiayi She; Hao Duan; Chunling Liu; Xiuhao Fu; Feifei Cui; Qi Qi; Zilong Zhang (Comput. Biol. Medicine, 2024)

MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks. - Hao Duan; Qingchen Zhang 001; Feifei Cui; Quan Zou 001; Zilong Zhang (PLoS Comput. Biol., 2024)

Hyb_SEnc: An Antituberculosis Peptide Predictor Based on a Hybrid Feature Vector and Stacked Ensemble Learning. - Xiuhao Fu; Hao Duan; Xiaofeng Zang; Chunling Liu; Xingfeng Li 001; Qingchen Zhang 001; Zilong Zhang; Quan Zou 001; Feifei Cui (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Toward Data Integrity Attacks Against Distributed Dynamic State Estimation in Smart Grid. - Dou An; Feiye Zhang; Feifei Cui; Qingyu Yang (IEEE Trans Autom. Sci. Eng., 2024)

Machine learning-based prediction model for distant metastasis of breast cancer. - Hao Duan; Yu Zhang; Haoye Qiu; Xiuhao Fu; Chunling Liu; Xiaofeng Zang; Anqi Xu; Ziyue Wu; Xingfeng Li 001; Qingchen Zhang 001; Zilong Zhang; Feifei Cui (Comput. Biol. Medicine, 2024)

PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model. - Ruiqi Liu; Shankai Yan; Zilong Zhang; Junlin Xu; Yajie Meng; Qingchen Zhang 001; Leyi Wei; Quan Zou 001; Feifei Cui (Comput. Biol. Chem., 2025)

Adaptive debiasing learning for drug repositioning. - Yajie Meng; Yi Wang; Xinrong Hu; Changcheng Lu; Xianfang Tang; Feifei Cui; Pan Zeng; Yuhua Yao; Jialiang Yang; Junlin Xu (J. Biomed. Informatics, 2025)

ACP-CLB: An Anticancer Peptide Prediction Model Based on Multichannel Discriminative Processing and Integration of Large Pretrained Protein Language Models. - Aoyun Geng; Zhenjie Luo; Aohan Li; Zilong Zhang; Quan Zou 001; Leyi Wei; Feifei Cui (J. Chem. Inf. Model., 2025)

AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction. - Yuanhao Li; Aoyun Geng; Zheyu Zhou; Feifei Cui; Junlin Xu; Yajie Meng; Leyi Wei; Quan Zou 001; Qingchen Zhang 001; Zilong Zhang (J. Chem. Inf. Model., 2025)

m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites. - Xinyu Li; Zhenjie Luo; Jingwei Lv; Chao Yang; Shankai Yan; Junlin Xu; Yajie Meng; Leyi Wei; Zilong Zhang; Quan Zou 001; Feifei Cui (J. Chem. Inf. Model., 2025)

GICL: A Cross-Modal Drug Property Prediction Framework Based on Knowledge Enhancement of Large Language Models. - Na Li; Jianbo Qiao; Fei Gao; Yanling Wang; Hua Shi; Zilong Zhang; Feifei Cui; Lichao Zhang; Leyi Wei (J. Chem. Inf. Model., 2025)

NeuroPred-AIMP: Multimodal Deep Learning for Neuropeptide Prediction via Protein Language Modeling and Temporal Convolutional Networks. - Jinjin Li; Shuwen Xiong; Hua Shi; Feifei Cui; Zilong Zhang; Leyi Wei (J. Chem. Inf. Model., 2025)

Deep Learning in Antimicrobial Peptide Prediction. - Changhang Lin; Shuwen Xiong; Feifei Cui; Zilong Zhang; Hua Shi; Leyi Wei (J. Chem. Inf. Model., 2025)

UMPPI: Unveiling Multilevel Protein-Peptide Interaction Prediction via Language Models. - Shuwen Xiong; Jiajie Cai; Hua Shi; Feifei Cui; Zilong Zhang; Leyi Wei (J. Chem. Inf. Model., 2025)

Taco-DDI: accurate prediction of drug-drug interaction events using graph transformer-based architecture and dynamic co-attention matrices. - Jianbo Qiao; Xu Guo; Junru Jin; Ding Wang; Kefei Li; Wenjia Gao; Feifei Cui; Zilong Zhang; Hua Shi; Leyi Wei (Neural Networks, 2025)

FERA-Net: A Novel Algorithm for Mars Water-Ice Cloud Segmentation Integrating Feature Enhancement, Residual, and Attention Mechanisms. - Xu Ma; Jialong Lai; Zhicheng Zhong; Feifei Cui (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2025)

RMDNet: RNA-aware dung beetle optimization-based multi-branch integration network for RNA-protein binding sites prediction. - Jiangbo Zhang; Yunhui Peng; Feifei Cui; Zilong Zhang; Shankai Yan; Qingchen Zhang 001 (BMC Bioinform., 2025)