Computational Model of Vascular Endothelial Growth Factor Spatial Distribution in Muscle and Pro-Angiogenic Cell Therapy. - Feilim Mac Gabhann; James W. Ji; Aleksander S. Popel (PLoS Comput. Biol., 2006)

Targeting Neuropilin-1 to Inhibit VEGF Signaling in Cancer: Comparison of Therapeutic Approaches. - Feilim Mac Gabhann; Aleksander S. Popel (PLoS Comput. Biol., 2006)

A compartment model of VEGF distribution in blood, healthy and diseased tissues. - Marianne O. Stefanini; Florence T. H. Wu; Feilim Mac Gabhann; Aleksander S. Popel (BMC Syst. Biol., 2008)

The Presence of VEGF Receptors on the Luminal Surface of Endothelial Cells Affects VEGF Distribution and VEGF Signaling. - Marianne O. Stefanini; Florence T. H. Wu; Feilim Mac Gabhann; Aleksander S. Popel (PLoS Comput. Biol., 2009)

Formation of VEGF isoform-specific spatial distributions governing angiogenesis: computational analysis. - Prakash Vempati; Aleksander S. Popel; Feilim Mac Gabhann (BMC Syst. Biol., 2011)

Multi-Scale Modeling of HIV Infection in vitro and APOBEC3G-Based Anti-Retroviral Therapy. - Iraj Hosseini; Feilim Mac Gabhann (PLoS Comput. Biol., 2012)

Dysregulation of the vascular endothelial growth factor and semaphorin ligand-receptor families in prostate cancer metastasis. - R. Joseph Bender; Feilim Mac Gabhann (BMC Syst. Biol., 2015)

Site-Specific Phosphorylation of VEGFR2 Is Mediated by Receptor Trafficking: Insights from a Computational Model. - Lindsay Wendel Clegg; Feilim Mac Gabhann (PLoS Comput. Biol., 2015)

A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands. - Lindsay E. Clegg; Feilim Mac Gabhann (PLoS Comput. Biol., 2017)

Wisdom of crowds in computational biology. - Jason A. Papin; Feilim Mac Gabhann (PLoS Comput. Biol., 2019)

Improving reproducibility in computational biology research. - Jason A. Papin; Feilim Mac Gabhann; Herbert M. Sauro; David P. Nickerson; Anand K. Rampadarath (PLoS Comput. Biol., 2020)

Mechanistic model demonstrates importance of autocrine IL-8 secretion by neutrophils. - Wangui Mbuguiro; Feilim Mac Gabhann (BCB, 2021)

Collaborating with our community to increase code sharing. - Lauren Cadwallader; Jason A. Papin; Feilim Mac Gabhann; Rebecca Kirk (PLoS Comput. Biol., 2021)

Advancing code sharing in the computational biology community. - Lauren Cadwallader; Feilim Mac Gabhann; Jason A. Papin; Virginia E. Pitzer (PLoS Comput. Biol., 2022)

The blossoming of methods and software in computational biology. - Feilim Mac Gabhann; Virginia E. Pitzer; Jason A. Papin (PLoS Comput. Biol., 2023)

Celebrating a body of work. - Jason A. Papin; Feilim Mac Gabhann; Virginia E. Pitzer (PLoS Comput. Biol., 2024)

Mechanistic computational modeling of monospecific and bispecific antibodies targeting interleukin-6/8 receptors. - Christina M. P. Ray; Huilin Yang; Jamie B. Spangler; Feilim Mac Gabhann (PLoS Comput. Biol., 2024)

Trafficking dynamics of VEGFR1, VEGFR2, and NRP1 in human endothelial cells. - Sarvenaz Sarabipour; Karina Kinghorn; Kaitlyn M. Quigley; Anita Kovacs-Kasa; Brian H. Annex; Victoria L. Bautch; Feilim Mac Gabhann (PLoS Comput. Biol., 2024)

Ten simple rules for good model-sharing practices. - Ismael Kherroubi Garcia; Christopher Erdmann; Sandra Gesing; C. Michael Barton; Lauren Cadwallader; Geerten Hengeveld; Christine R. Kirkpatrick; Kathryn Knight; Carsten Lemmen; Rebecca Ringuette; Qing Zhan; Melissa Harrison; et al. (PLoS Comput. Biol., 2025)