Genoogle: an indexed and parallelized search engine for similar DNA sequences. - Felipe Fernandes Albrecht (CoRR, 2015)

DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. - Felipe Albrecht; Markus List; Christoph Bock; Thomas Lengauer (Nucleic Acids Res., 2016)

DeepBlueR: large-scale epigenomic analysis in R. - Felipe Albrecht; Markus List; Christoph Bock; Thomas Lengauer (Bioinform., 2017)

Ten Simple Rules for Developing Usable Software in Computational Biology. - Markus List; Peter Ebert; Felipe Albrecht (PLoS Comput. Biol., 2017)

Analyzing epigenomic data in a large-scale context. - Felipe Fernandes Albrecht (2019)