WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing. - Marina Ainciburu; Duncan M. Morgan; Erica A. K. Depasquale; J. Christopher Love; Felipe Prósper; Peter van Galen (Bioinform., 2022)

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism. - Iñigo Apaolaza; Edurne San José-Enériz; Luis Vitores Valcarcel; Xabier Agirre; Felipe Prósper; Francisco J. Planes (PLoS Comput. Biol., 2022)

BOSO: A novel feature selection algorithm for linear regression with high-dimensional data. - Luis Vitores Valcarcel; Edurne San José-Enériz; Xabier Cendoya; Ángel Rubio; Xabier Agirre; Felipe Prósper; Francisco J. Planes (PLoS Comput. Biol., 2022)

LIBRA: an adaptative integrative tool for paired single-cell multi-omics data. - Xabier Martinez de Morentin; Sumeer Ahmad Khan; Robert Lehmann 002; Sally Sisi Qu; Alberto Maillo; Narsis A. Kiani; Felipe Prósper; Jesper Tegnér; David Gomez-Cabrero (Quant. Biol., 2023)

Experimentally-guided in silico design of engineered heart tissues to improve cardiac electrical function after myocardial infarction. - Ricardo M. Rosales; Konstantinos A. Mountris; Aida Oliván-Viguera; María Pérez-Zabalza; Gerardo Cedillo-Servin; Olalla Iglesias-García; Andrei Hrynevich; Miguel Castilho; Jos Malda; Felipe Prósper; Manuel Doblaré; Manuel M. Mazo; et al. (Comput. Biol. Medicine, 2024)