STAR: ultrafast universal RNA-seq aligner. - Alexander Dobin; Carrie A. Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R. Gingeras (Bioinform., 2013)

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. - Xiaoyu Chen; Ole Schulz-Trieglaff; Richard Shaw; Bret Barnes; Felix Schlesinger; Morten Källberg; Anthony J. Cox; Semyon Kruglyak; Christopher T. Saunders (Bioinform., 2016)

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions. - Egor Dolzhenko; Viraj Deshpande; Felix Schlesinger; Peter Krusche; Roman Petrovski; Sai Chen; Dorothea Emig-Agius; Andrew Gross; Giuseppe Narzisi; Brett Bowman; Konrad Scheffler; Joke J. F. A van Vugt; et al. (Bioinform., 2019)