Unipept web services for metaproteomics analysis. - Bart Mesuere; Toon Willems; Felix Van der Jeugt; Bart Devreese; Peter Vandamme; Peter Dawyndt (Bioinform., 2016)

Unipept CLI 2.0: adding support for visualizations and functional annotations. - Pieter Verschaffelt; Philippe Van Thienen; Tim Van Den Bossche; Felix Van der Jeugt; Caroline De Tender; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2020)

FragGeneScanRs: faster gene prediction for short reads. - Felix Van der Jeugt; Peter Dawyndt; Bart Mesuere (BMC Bioinform., 2022)

Dodona: Learn to code with a virtual co-teacher that supports active learning. - Charlotte Van Petegem; Rien Maertens; Niko Strijbol; Jorg Van Renterghem; Felix Van der Jeugt; Bram de Wever; Peter Dawyndt; Bart Mesuere (SoftwareX, 2023)