Robust self-training strategy for various molecular biology prediction tasks. - Hehuan Ma; Feng Jiang 012; Yu Rong 001; Yuzhi Guo; Junzhou Huang (BCB, 2022)

AlphaEpi: Enhancing B Cell Epitope Prediction with AlphaFold 3. - Feng Jiang 012; Yuzhi Guo; Hehuan Ma; Saiyang Na; Weizhi An; Bing Song; Yi Han; Jean Gao; Tao Wang 161; Junzhou Huang (BCB, 2024)

Causal Subgraphs and Information Bottlenecks: Redefining OOD Robustness in Graph Neural Networks. - Weizhi An; Wenliang Zhong; Feng Jiang 012; Hehuan Ma; Junzhou Huang (ECCV (88), 2024)

GTE: a graph learning framework for prediction of T-cell receptors and epitopes binding specificity. - Feng Jiang 012; Yuzhi Guo; Hehuan Ma; Saiyang Na; Wenliang Zhong; Yi Han; Tao Wang 161; Junzhou Huang (Briefings Bioinform., 2024)

Segment Any Cell: A SAM-based Auto-prompting Fine-tuning Framework for Nuclei Segmentation. - Saiyang Na; Yuzhi Guo; Feng Jiang 012; Hehuan Ma; Junzhou Huang (CoRR, 2024)

Compositional Image Retrieval via Instruction-Aware Contrastive Learning. - Wenliang Zhong; Weizhi An; Feng Jiang 012; Hehuan Ma; Yuzhi Guo; Junzhou Huang (CoRR, 2024)

UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers. - Yuwei Miao; Yuzhi Guo; Hehuan Ma; Jingquan Yan; Feng Jiang 012; Weizhi An; Jean Gao; Junzhou Huang (CoRR, 2024)

Toward Robust Self-Training Paradigm for Molecular Prediction Tasks. - Hehuan Ma; Feng Jiang 012; Yu Rong 001; Yuzhi Guo; Junzhou Huang (J. Comput. Biol., 2024)

GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction. - Yuwei Miao; Yuzhi Guo; Hehuan Ma; Jingquan Yan; Feng Jiang 012; Rui Liao; Junzhou Huang (AAAI, 2025)

HAGE: Hierarchical Alignment Gene-Enhanced Pathology Representation Learning with Spatial Transcriptomics. - Thao M. Dang; Haiqing Li; Yuzhi Guo; Hehuan Ma; Feng Jiang 012; Yuwei Miao; Qifeng Zhou; Jean Gao; Junzhou Huang (MICCAI (1), 2025)

Text-Guided Multi-instance Learning for Scoliosis Screening via Gait Video Analysis. - Haiqing Li; Yuzhi Guo; Feng Jiang 012; Thao M. Dang; Hehuan Ma; Qifeng Zhou; Jean Gao; Junzhou Huang (MICCAI (6), 2025)

Leveraging Gait Patterns as Biomarkers: An attention-guided Deep Multiple Instance Learning Network for Scoliosis Classification. - Haiqing Li; Yuzhi Guo; Feng Jiang 012; Qifeng Zhou; Hehuan Ma; Junzhou Huang (CoRR, 2025)

TRIDENT: Tri-Modal Molecular Representation Learning with Taxonomic Annotations and Local Correspondence. - Feng Jiang 012; Mangal Prakash; Hehuan Ma; Jianyuan Deng; Yuzhi Guo; Amina Mollaysa; Tommaso Mansi; Rui Liao; Junzhou Huang (CoRR, 2025)

GRAM-TDI: adaptive multimodal representation learning for drug target interaction prediction. - Feng Jiang 012; Amina Mollaysa; Hehuan Ma; Tommaso Mansi; Junzhou Huang; Mangal Prakash; Rui Liao (CoRR, 2025)