An Approach to Finding Short Tandem Repeats in Complete Genomes. - Li-Cheng Wu; Jorng-Tzong Horng; Feng-Mao Lin (German Conference on Bioinformatics, 2001)

Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. - Jorng-Tzong Horng; Feng-Mao Lin; J. H. Lin; Hsien-Da Huang; Baw-Jhiune Liu (IEEE Trans. Inf. Technol. Biomed., 2003)

Performance evaluation of a database of repetitive elements in complete genomes. - Jorng-Tzong Horng; Feng-Mao Lin; Li-Cheng Wu; Chia-Hui Chang (J. Syst. Softw., 2004)

Identifying the combination of genetic factors that determine susceptibility to cervical cancer. - Jorng-Tzong Horng; Kai-Chih Hu; Li-Cheng Wu; Hsien-Da Huang; Feng-Mao Lin; Shir-Ly Huang; Horn-Cheng Lai; Ton-Yuen Chu (IEEE Trans. Inf. Technol. Biomed., 2004)

A database to aid probe design for virus identification. - Feng-Mao Lin; Hsien-Da Huang; Yu-Chung Chang; Pak-Leong Chan; Jorng-Tzong Horng; Ming-Tat Ko (APBC, 2005)

Primer design for multiplex PCR using a genetic algorithm. - Feng-Mao Lin; Hsien-Da Huang; Hsi-Yuan Huang; Jorng-Tzong Horng (GECCO, 2005)

SpliceInfo: an information repository for mRNA alternative splicing in human genome. - Hsien-Da Huang; Jorng-Tzong Horng; Feng-Mao Lin; Yu-Chung Chang; Chen-Chia Huang (Nucleic Acids Res., 2005)

Database to Dynamically Aid Probe Design for Virus Identification. - Feng-Mao Lin; Hsien-Da Huang; Y.-C. Chang; Ann-Ping Tsou; P.-L. Chan; L.-C. Wu; Meng-Feng Tsai; Jorng-Tzong Horng (IEEE Trans. Inf. Technol. Biomed., 2006)

Primer design for multiplex PCR using a genetic algorithm. - Li-Cheng Wu; Jorng-Tzong Horng; Hsi-Yuan Huang; Feng-Mao Lin; Hsien-Da Huang; Meng-Feng Tsai (Soft Comput., 2007)

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. - Wei-Chi Wang; Feng-Mao Lin; Wen-Chi Chang; Kuan-Yu Lin; Hsien-Da Huang; Na-Sheng Lin (BMC Bioinform., 2009)

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. - Tzong-Yi Lee; Justin Bo-Kai Hsu; Feng-Mao Lin; Wen-Chi Chang; Po-Chiang Hsu; Hsien-Da Huang (J. Comput. Chem., 2010)

miRTarBase: a database curates experimentally validated microRNA-target interactions. - Sheng-Da Hsu; Feng-Mao Lin; Wei-Yun Wu; Chao Liang; Wei-Chih Huang; Wen-Ling Chan; Wen-Ting Tsai; Goun-Zhou Chen; Chia-Jung Lee; Chih-Min Chiu; Chia-Hung Chien; Ming-Chia Wu; et al. (Nucleic Acids Res., 2011)

Identifying cancer highly-expressed membrane receptors for targeted drug delivery. - Wei-Chih Huang; Feng-Mao Lin; Tzu-Hao Chang; Kuang-Wen Liao; Hsien-Da Huang (Int. J. Bioinform. Res. Appl., 2012)

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing. - Chih-Min Chiu; Feng-Mao Lin; Tzu-Hao Chang; Wei-Chih Huang; Chao Liang; Wei-Yun Wu; Tzu-Ling Yang; Shun-Long Weng; Hsien-Da Huang (IWBBIO, 2013)

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. - Chih-Hung Chou; Feng-Mao Lin; Min-Te Chou; Sheng-Da Hsu; Tzu-Hao Chang; Shun-Long Weng; Sirjana Shrestha; Chiung-Chih Hsiao; Jui-Hung Hung; Hsien-Da Huang (BMC Genom., 2013)

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing. - Chih-Min Chiu; Feng-Mao Lin; Tzu-Hao Chang; Wei-Chih Huang; Chao Liang; Ting Yang; Wei-Yun Wu; Tzu-Ling Yang; Shun-Long Weng; Hsien-Da Huang (J. Clin. Bioinform., 2014)

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. - Sheng-Da Hsu; Yu-Ting Tseng; Sirjana Shrestha; Yu-Ling Lin; Anas Khaleel; Chih-Hung Chou; Chao-Fang Chu; Hsi-Yuan Huang; Ching-Min Lin; Shu-Yi Ho; Ting-Yan Jian; Feng-Mao Lin; et al. (Nucleic Acids Res., 2014)

CircNet: a database of circular RNAs derived from transcriptome sequencing data. - Yu-Chen Liu; Jianrong Li; Chuan-Hu Sun; Erik Andrews; Rou-Fang Chao; Feng-Mao Lin; Shun-Long Weng; Sheng-Da Hsu; Chieh-Chen Huang; Chao Cheng; Chun-Chi Liu; Hsien-Da Huang (Nucleic Acids Res., 2016)