TRCirc: a resource for transcriptional regulation information of circRNAs. - Zhidong Tang; Xuecang Li; Jianmei Zhao; Fengcui Qian; Chenchen Feng; Yanyu Li; Jian Zhang 084; Yong Jiang 004; Yongsan Yang; Qiuyu Wang; Chunquan Li 002 (Briefings Bioinform., 2019)

SEdb: a comprehensive human super-enhancer database. - Yong Jiang 004; Fengcui Qian; Xuefeng Bai 002; Yuejuan Liu; Qiuyu Wang; Bo Ai 005; Xiaole Han; Shanshan Shi; Jian Zhang 084; Xuecang Li; Zhidong Tang; Qi Pan; et al. (Nucleic Acids Res., 2019)

SEanalysis: a web tool for super-enhancer associated regulatory analysis. - Fengcui Qian; Xuecang Li; Jincheng Guo; Jianmei Zhao; Yanyu Li; Zhidong Tang; Liwei Zhou; Jian Zhang 084; Xuefeng Bai 002; Yong Jiang 004; Qi Pan; Qiuyu Wang; et al. (Nucleic Acids Res., 2019)

HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures. - Meng Li; Jianmei Zhao; Xuecang Li; Yang Chen; Chenchen Feng; Fengcui Qian; Yuejuan Liu; Jian Zhang 084; Jianzhong He; Bo Ai 005; Ziyu Ning; Wei Liu 187; et al. (Briefings Bioinform., 2020)

KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors. - Chenchen Feng; Chao Song; Yuejuan Liu; Fengcui Qian; Yu Gao; Ziyu Ning; Qiuyu Wang; Yong Jiang 004; Yanyu Li; Meng Li; Jiaxin Chen; Jian Zhang 084; et al. (Nucleic Acids Res., 2020)

TRlnc: a comprehensive database for human transcriptional regulatory information of lncRNAs. - Yanyu Li; Xuecang Li; Yongsan Yang; Meng Li; Fengcui Qian; Zhidong Tang; Jianmei Zhao; Jian Zhang 084; Xuefeng Bai 002; Yong Jiang 004; Jianyuan Zhou; Yuexin Zhang; et al. (Briefings Bioinform., 2021)

LncSEA: a platform for long non-coding RNA related sets and enrichment analysis. - Jiaxin Chen; Jian Zhang 084; Yu Gao; Yanyu Li; Chenchen Feng; Chao Song; Ziyu Ning; Xinyuan Zhou; Jianmei Zhao; Minghong Feng; Yuexin Zhang; Ling Wei; et al. (Nucleic Acids Res., 2021)

GREAP: a comprehensive enrichment analysis software for human genomic regions. - Yongsan Yang; Fengcui Qian; Xuecang Li; Yanyu Li; Liwei Zhou; Qiuyu Wang; Xinyuan Zhou; Jian Zhang 084; Chao Song; Zhengmin Yu; Ting Cui; Chenchen Feng; et al. (Briefings Bioinform., 2022)

CanMethdb: a database for genome-wide DNA methylation annotation in cancers. - Jianmei Zhao; Fengcui Qian; Xuecang Li; Zhengmin Yu; Jiang Zhu; Rui Yu; Yue Zhao; Ke Ding; Yanyu Li; Yongsan Yang; Qi Pan; Jiaxin Chen; et al. (Bioinform., 2023)

SEdb 2.0: a comprehensive super-enhancer database of human and mouse. - Yuezhu Wang; Chao Song; Jun Zhao; Yuexin Zhang; Xilong Zhao; Chenchen Feng; Guorui Zhang; Jiang Zhu; Fan Wang 026; Fengcui Qian; Liwei Zhou; Jian Zhang 084; et al. (Nucleic Acids Res., 2023)

SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse. - Fengcui Qian; Li-Wei Zhou; Yanyu Li; Zhengmin Yu; Li-Dong Li; Yuezhu Wang; Mingcong Xu; Qiuyu Wang; Chunquan Li 002 (Nucleic Acids Res., 2023)

PEGCN: A Single-Cell Type Annotation model based on GCN with Pseudo Labels and Ensemble Learning. - Chi Zhu; Fengcui Qian; Yongbin Liu; Ying Yu; Chunquan Li 002; Chunping Ouyang (BIBM, 2024)

FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs. - Yan-Yu Li; Fengcui Qian; Guo-Rui Zhang; Xue-Cang Li; Li-Wei Zhou; Zheng-Min Yu; Wei Liu 187; Qiu-Yu Wang; Chunquan Li 002 (Briefings Bioinform., 2024)