Pathway Mapping with Operon Information: An Integer-Programming Method. - Fenglou Mao; Zhengchang Su; Victor Olman; David Chuang; Ying Xu 001 (CSB, 2004)

Accurate Prediction of Orthologous Gene Groups in Microbes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (CSB, 2005)

PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. - Bo Yan; Youxing Qu; Fenglou Mao; Victor Olman; Ying Xu 001 (J. Comput. Sci. Technol., 2005)

Understanding microbial genomic structures and applications to biological pathway inference. - Zhengchang Su; Fenglou Mao; Hongwei Wu; PhuongAn Dam; Xin Chen 037; Tao Jiang 001; Victor Olman; Brian Palenik; Ying Xu 001 (GrC, 2006)

Mapping of orthologous genes in the context of biological pathways: An application of integer programming. - Fenglou Mao; Zhengchang Su; Victor Olman; PhuongAn Dam; Zhijie Liu; Ying Xu 001 (Proc. Natl. Acad. Sci. USA, 2006)

An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (ISBRA, 2007)

On application of directons to functional classification of genes in prokaryotes. - Hongwei Wu; Fenglou Mao; Victor Olman; Ying Xu 001 (Comput. Biol. Chem., 2008)

DOOR: a database for prokaryotic operons. - Fenglou Mao; PhuongAn Dam; Jacky Chou; Victor Olman; Ying Xu 001 (Nucleic Acids Res., 2009)

Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. - Victor Olman; Fenglou Mao; Hongwei Wu; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Genome-wide discovery of missing genes in biological pathways of prokaryotes. - Yong Chen; Fenglou Mao; Guojun Li; Ying Xu 001 (BMC Bioinform., 2011)

Quartet decomposition server: a platform for analyzing phylogenetic trees. - Fenglou Mao; David Williams 003; Olga Zhaxybayeva; Maria S. Poptsova; Pascal Lapierre; J. Peter Gogarten; Ying Xu 001 (BMC Bioinform., 2012)

dbCAN: a web resource for automated carbohydrate-active enzyme annotation. - Yanbin Yin; Xizeng Mao; Jincai Yang; Xin Chen; Fenglou Mao; Ying Xu 001 (Nucleic Acids Res., 2012)

DOOR 2.0: presenting operons and their functions through dynamic and integrated views. - Xizeng Mao; Qin Ma 003; Chuan Zhou 009; Xin Chen; Hanyuan Zhang; Jincai Yang; Fenglou Mao; Wei Lai; Ying Xu 001 (Nucleic Acids Res., 2014)

NIGMS Sandbox: a learning platform toward democratizing cloud computing for biomedical research. - Ming Lei; Lakshmi K. Matukumalli; Krishan Arora; Nick Weber; Rachel Malashock; Fenglou Mao; Susan Gregurick; Jon R. Lorsch (Briefings Bioinform., 2024)