% csauthors.net - beta - BibTeX bibliography of Fengzhu Sun
@article{journals/jcb/Sun95,
title = {The Polymerase Chain Reaction and Branching Processes.},
year = {1995},
journal = {J. Comput. Biol.},
author = {{Fengzhu Sun}}
}
@article{journals/jcb/SunBAW97,
title = {Pooling Strategies for Establishing Physical Genome Maps Using FISH.},
year = {1997},
journal = {J. Comput. Biol.},
author = {{Fengzhu Sun} and {Gary Benson} and {Norman Arnheim} and {Michael S. Waterman}}
}
@article{journals/siamam/TorneySB98,
title = {Optimizing Nonadaptive Group Tests for Objects with Heterogeneous Priors.},
year = {1998},
journal = {SIAM J. Appl. Math.},
author = {{David C. Torney} and {Fengzhu Sun} and {William J. Bruno}}
}
@article{journals/jcb/Sun99,
title = {Modeling DNA Shuffling.},
year = {1999},
journal = {J. Comput. Biol.},
author = {{Fengzhu Sun}}
}
@article{journals/jcb/WangZCS00,
title = {Estimation of the Mutation Rate During Error-prone Polymerase Chain Reaction.},
year = {2000},
journal = {J. Comput. Biol.},
author = {{Dai Wang} and {Cheng Zhao} and {Rong Cheng} and {Fengzhu Sun}}
}
@inproceedings{conf/recomb/DengMSC02,
title = {Inferring domain-domain interactions from protein-protein interactions.},
year = {2002},
booktitle = {RECOMB},
author = {{Minghua Deng} and {Shipra Mehta} and {Fengzhu Sun} and {Ting Chen 006}},
publisher = {ACM},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002}
}
@inproceedings{conf/recomb/ZhangCWQLS02,
title = {Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.},
year = {2002},
booktitle = {Computational Methods for SNPs and Haplotype Inference},
author = {{Kui Zhang} and {Ting Chen 006} and {Michael S. Waterman} and {Zhaohui S. Qin} and {Jun S. Liu} and {Fengzhu Sun}},
publisher = {Springer},
booktitle = {Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers}
}
@inproceedings{conf/psb/DengSC03,
title = {Assessment of the reliability of protein-protein interactions and protein function prediction.},
year = {2003},
booktitle = {Pacific Symposium on Biocomputing},
author = {{Minghua Deng} and {Fengzhu Sun} and {Ting Chen 006}},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003}
}
@inproceedings{conf/recomb/ZhangSWC03,
title = {Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.},
year = {2003},
booktitle = {RECOMB},
author = {{Kui Zhang} and {Fengzhu Sun} and {Michael S. Waterman} and {Ting Chen 006}},
publisher = {ACM},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003}
}
@article{journals/jcb/DengZMCS03,
title = {Prediction of Protein Function Using Protein-Protein Interaction Data.},
year = {2003},
journal = {J. Comput. Biol.},
author = {{Minghua Deng} and {Kui Zhang} and {Shipra Mehta} and {Ting Chen 006} and {Fengzhu Sun}}
}
@article{journals/jcb/LaiSAS03,
title = {The Mutation Process of Microsatellites During the Polymerase Chain Reaction.},
year = {2003},
journal = {J. Comput. Biol.},
author = {{Yinglei Lai} and {Deepali Shinde} and {Norman Arnheim} and {Fengzhu Sun}}
}
@inproceedings{conf/psb/KimZS04,
title = {A Comparison of Different Strategies for Computing Confidence Intervals of the Linkage Disequilibrium Measure.},
year = {2004},
booktitle = {Pacific Symposium on Biocomputing},
author = {{Sung K. Kim} and {Kui Zhang} and {Fengzhu Sun}},
publisher = {World Scientific},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004}
}
@article{journals/bioinformatics/DengTSC04,
title = {Mapping gene ontology to proteins based on protein-protein interaction data.},
year = {2004},
journal = {Bioinform.},
author = {{Minghua Deng} and {Zhidong Tu} and {Fengzhu Sun} and {Ting Chen 006}}
}
@article{journals/jcb/DengCS04,
title = {An Integrated Probabilistic Model for Functional Prediction of Proteins.},
year = {2004},
journal = {J. Comput. Biol.},
author = {{Minghua Deng} and {Ting Chen 006} and {Fengzhu Sun}}
}
@article{journals/jcb/LiSG04,
title = {Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression.},
year = {2004},
journal = {J. Comput. Biol.},
author = {{Wentian Li} and {Fengzhu Sun} and {Ivo Grosse}}
}
@article{journals/bioinformatics/ZhangQCLWS05,
title = {HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.},
year = {2005},
journal = {Bioinform.},
author = {{Kui Zhang} and {Zhaohui S. Qin} and {Ting Chen 006} and {Jun S. Liu} and {Michael S. Waterman} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/ZhangSZ05,
title = {HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.},
year = {2005},
journal = {Bioinform.},
author = {{Kui Zhang} and {Fengzhu Sun} and {Hongyu Zhao 003}}
}
@inproceedings{conf/ismb/TuWACS06,
title = {An integrative approach for causal gene identification and gene regulatory pathway inference.},
year = {2006},
booktitle = {ISMB (Supplement of Bioinformatics)},
author = {{Zhidong Tu} and {Li Wang} and {Michelle N. Arbeitman} and {Ting Chen 006} and {Fengzhu Sun}},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006}
}
@article{journals/bioinformatics/ChengMYSL06,
title = {MARD: a new method to detect differential gene expression in treatment-control time courses.},
year = {2006},
journal = {Bioinform.},
author = {{Chao Cheng} and {Xiaotu Ma} and {Xiting Yan} and {Fengzhu Sun} and {Lei M. Li}}
}
@article{journals/bioinformatics/RuanDSSFS06,
title = {Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors.},
year = {2006},
journal = {Bioinform.},
author = {{Quansong Ruan} and {Debojyoti Dutta} and {Michael S. Schwalbach} and {Joshua A. Steele} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/RuanSSFS06,
title = {A dynamic programming algorithm for binning microbial community profiles.},
year = {2006},
journal = {Bioinform.},
author = {{Quansong Ruan} and {Joshua A. Steele} and {Michael S. Schwalbach} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/bmcbi/JiangYSC06,
title = {Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy.},
year = {2006},
journal = {BMC Bioinform.},
author = {{Rui Jiang 001} and {Hua Yang} and {Fengzhu Sun} and {Ting Chen 006}}
}
@article{journals/bmcbi/LeeDSC06,
title = {An integrated approach to the prediction of domain-domain interactions.},
year = {2006},
journal = {BMC Bioinform.},
author = {{Hyunju Lee} and {Minghua Deng} and {Fengzhu Sun} and {Ting Chen 006}}
}
@article{journals/bmcbi/NicolasSL06,
title = {A model-based approach to selection of tag SNPs.},
year = {2006},
journal = {BMC Bioinform.},
author = {{Pierre Nicolas} and {Fengzhu Sun} and {Lei M. Li}}
}
@article{journals/bioinformatics/MaLWS07,
title = {CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.},
year = {2007},
journal = {Bioinform.},
author = {{Xiaotu Ma} and {Hyunju Lee} and {Li Wang} and {Fengzhu Sun}}
}
@article{journals/bmcbi/ChengYSL07,
title = {Inferring activity changes of transcription factors by binding association with sorted expression profiles.},
year = {2007},
journal = {BMC Bioinform.},
author = {{Chao Cheng} and {Xiting Yan} and {Fengzhu Sun} and {Lei M. Li}}
}
@article{journals/bmcbi/YanS08,
title = {Testing gene set enrichment for subset of genes: Sub-GSE.},
year = {2008},
journal = {BMC Bioinform.},
author = {{Xiting Yan} and {Fengzhu Sun}}
}
@article{journals/bmcsb/ZhouMS08,
title = {The effects of protein interactions, gene essentiality and regulatory regions on expression variation.},
year = {2008},
journal = {BMC Syst. Biol.},
author = {{Linqi Zhou} and {Xiaotu Ma} and {Fengzhu Sun}}
}
@article{journals/jcb/PapeRSV08,
title = {Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands.},
year = {2008},
journal = {J. Comput. Biol.},
author = {{Utz J. Pape} and {Sven Rahmann} and {Fengzhu Sun} and {Martin Vingron}}
}
@article{journals/bmcbi/WangNLS09,
title = {Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.},
year = {2009},
journal = {BMC Bioinform.},
author = {{Wenhui Wang} and {Juan Nunez-Iglesias} and {Yihui Luan} and {Fengzhu Sun}}
}
@article{journals/cominfsys/ChenJS09,
title = {Bayesian Models and Gibbs Sampling Strategies for Local Graph Alignment and Motif Identification in Stochastic Biological Networks.},
year = {2009},
journal = {Commun. Inf. Syst.},
author = {{Ting Chen 006} and {Rui Jiang 001} and {Fengzhu Sun}}
}
@article{journals/jcb/ReinertCSW09,
title = {Alignment-Free Sequence Comparison (I): Statistics and Power.},
year = {2009},
journal = {J. Comput. Biol.},
author = {{Gesine Reinert} and {David Chew} and {Fengzhu Sun} and {Michael S. Waterman}}
}
@article{journals/jcb/WanRSW10,
title = {Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics.},
year = {2010},
journal = {J. Comput. Biol.},
author = {{Lin Wan} and {Gesine Reinert} and {Fengzhu Sun} and {Michael S. Waterman}}
}
@article{journals/jcb/ZhaiKLRWS10,
title = {The Power of Detecting Enriched Patterns: An HMM Approach.},
year = {2010},
journal = {J. Comput. Biol.},
author = {{Zhiyuan Zhai} and {Shih-Yen Ku} and {Yihui Luan} and {Gesine Reinert} and {Michael S. Waterman} and {Fengzhu Sun}}
}
@incollection{books/daglib/p/TuZS11,
title = {Inferring Signaling and Gene Regulatory Network from Genetic and Genomic Information.},
year = {2011},
booktitle = {Handbook of Statistical Bioinformatics},
author = {{Zhidong Tu} and {Jun Zhu} and {Fengzhu Sun}},
publisher = {Springer},
booktitle = {Handbook of Statistical Bioinformatics.}
}
@article{journals/bmcbi/ChangLS11,
title = {Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny.},
year = {2011},
journal = {BMC Bioinform.},
author = {{Qin Chang} and {Yihui Luan} and {Fengzhu Sun}}
}
@article{journals/bmcbi/ZhangSJ11,
title = {Integrating multiple protein-protein interaction networks to prioritize disease genes: a Bayesian regression approach.},
year = {2011},
journal = {BMC Bioinform.},
author = {{Wangshu Zhang} and {Fengzhu Sun} and {Rui Jiang 001}}
}
@article{journals/bmcsb/XiaSCCSVFS11,
title = {Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.},
year = {2011},
journal = {BMC Syst. Biol.},
author = {{Li C. Xia} and {Joshua A. Steele} and {Jacob A. Cram} and {Zoe G. Cardon} and {Sheri L. Simmons} and {Joseph J. Vallino} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/bmcsb/ZhangCSJ11,
title = {DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases.},
year = {2011},
journal = {BMC Syst. Biol.},
author = {{Wangshu Zhang} and {Yong Chen} and {Fengzhu Sun} and {Rui Jiang 001}}
}
@article{journals/jcb/MengSZW11,
title = {Sequence Alignment as Hypothesis Testing.},
year = {2011},
journal = {J. Comput. Biol.},
author = {{Lu Meng} and {Fengzhu Sun} and {Xuegong Zhang} and {Michael S. Waterman}}
}
@inproceedings{conf/recomb/SongRZLDS12,
title = {Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract.},
year = {2012},
booktitle = {RECOMB},
author = {{Kai Song} and {Jie Ren 006} and {Zhiyuan Zhai} and {Xuemei Liu} and {Minghua Deng} and {Fengzhu Sun}},
publisher = {Springer},
booktitle = {Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings}
}
@article{journals/jcb/ChenMSZ12,
title = {Preface: Special Issue.},
year = {2012},
journal = {J. Comput. Biol.},
author = {{Ting Chen 006} and {Paul Marjoram} and {Fengzhu Sun} and {Xianghong Jasmine Zhou}}
}
@article{journals/jcb/ZhaiRSWLS12,
title = {Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads.},
year = {2012},
journal = {J. Comput. Biol.},
author = {{Zhiyuan Zhai} and {Gesine Reinert} and {Kai Song} and {Michael S. Waterman} and {Yihui Luan} and {Fengzhu Sun}}
}
@article{journals/tcbb/WanS12,
title = {CEDER: Accurate Detection of Differentially Expressed Genes by Combining Significance of Exons Using RNA-Seq.},
year = {2012},
journal = {IEEE ACM Trans. Comput. Biol. Bioinform.},
author = {{Lin Wan} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/RenSSDR13,
title = {Multiple alignment-free sequence comparison.},
year = {2013},
journal = {Bioinform.},
author = {{Jie Ren 006} and {Kai Song} and {Fengzhu Sun} and {Minghua Deng} and {Gesine Reinert}}
}
@article{journals/bioinformatics/XiaACFS13,
title = {Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.},
year = {2013},
journal = {Bioinform.},
author = {{Li C. Xia} and {Dongmei Ai} and {Jacob A. Cram} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/bmcgenomics/ChenS13,
title = {A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms.},
year = {2013},
journal = {BMC Genom.},
author = {{Quan Chen} and {Fengzhu Sun}}
}
@article{journals/jcb/SongRZLDS13,
title = {Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads.},
year = {2013},
journal = {J. Comput. Biol.},
author = {{Kai Song} and {Jie Ren 006} and {Zhiyuan Zhai} and {Xuemei Liu} and {Minghua Deng} and {Fengzhu Sun}}
}
@article{journals/jcb/Sun13,
title = {Preface: Research in Computational Molecular Biology (RECOMB 2013).},
year = {2013},
journal = {J. Comput. Biol.},
author = {{Fengzhu Sun}}
}
@article{journals/quanbio/ZhangS13,
title = {Meeting report on RECOMB 2013 (the 17th Annual International Conference on Research in Computational Molecular Biology).},
year = {2013},
journal = {Quant. Biol.},
author = {{Xuegong Zhang} and {Fengzhu Sun}}
}
@article{journals/bib/MaCS14,
title = {Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks.},
year = {2014},
journal = {Briefings Bioinform.},
author = {{Xiaotu Ma} and {Ting Chen 006} and {Fengzhu Sun}}
}
@article{journals/bib/SongRRDWS14,
title = {New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.},
year = {2014},
journal = {Briefings Bioinform.},
author = {{Kai Song} and {Jie Ren 006} and {Gesine Reinert} and {Minghua Deng} and {Michael S. Waterman} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/AliRRSD14,
title = {Alignment-free protein interaction network comparison.},
year = {2014},
journal = {Bioinform.},
author = {{Waqar Ali} and {Tiago Rito} and {Gesine Reinert} and {Fengzhu Sun} and {Charlotte M. Deane}}
}
@article{journals/nar/LiuTLWMRSWCCLCZ14,
title = {DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.},
year = {2014},
journal = {Nucleic Acids Res.},
author = {{Chun-Chi Liu} and {Yu-Ting Tseng} and {Wenyuan Li 006} and {Chia-Yu Wu} and {Ilya Mayzus} and {Andrey Rzhetsky} and {Fengzhu Sun} and {Michael S. Waterman} and {Jeremy J. W. Chen} and {Preet M. Chaudhary} and {Joseph Loscalzo} and {Edward Crandall} and {Xianghong Jasmine Zhou}}
}
@article{journals/bioinformatics/LiuSBMP15,
title = {Multilevel regularized regression for simultaneous taxa selection and network construction with metagenomic count data.},
year = {2015},
journal = {Bioinform.},
author = {{Zhenqiu Liu} and {Fengzhu Sun} and {Jonathan Braun} and {Dermot P. B. McGovern} and {Steven T. Piantadosi}}
}
@article{journals/bmcbi/WangZLS15,
title = {Network tuned multiple rank aggregation and applications to gene ranking.},
year = {2015},
journal = {BMC Bioinform.},
author = {{Wenhui Wang} and {Xianghong Jasmine Zhou} and {Zhenqiu Liu} and {Fengzhu Sun}}
}
@article{journals/bmcbi/XiaACLFS15,
title = {Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.},
year = {2015},
journal = {BMC Bioinform.},
author = {{Li C. Xia} and {Dongmei Ai} and {Jacob A. Cram} and {Xiaoyi Liang} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/jcb/ChenZS15,
title = {Finding Genetic Overlaps Among Diseases Based on Ranked Gene Lists.},
year = {2015},
journal = {J. Comput. Biol.},
author = {{Quan Chen} and {Xianghong Jasmine Zhou} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/RenSDRCS16,
title = {Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.},
year = {2016},
journal = {Bioinform.},
author = {{Jie Ren 006} and {Kai Song} and {Minghua Deng} and {Gesine Reinert} and {Charles H. Cannon} and {Fengzhu Sun}}
}
@article{journals/bmcsb/ZhangCS16,
title = {Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships.},
year = {2016},
journal = {BMC Syst. Biol.},
author = {{Wangshu Zhang} and {Marcelo P. Coba} and {Fengzhu Sun}}
}
@article{journals/biodatamining/LiuSM17,
title = {Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data.},
year = {2017},
journal = {BioData Min.},
author = {{Zhenqiu Liu} and {Fengzhu Sun} and {Dermot P. B. McGovern}}
}
@article{journals/bioinformatics/LuCFS17,
title = {COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.},
year = {2017},
journal = {Bioinform.},
author = {{Yang Young Lu} and {Ting Chen 006} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/bmcbi/WangWLS17,
title = {Improving contig binning of metagenomic data using (d2S) oligonucleotide frequency dissimilarity.},
year = {2017},
journal = {BMC Bioinform.},
author = {{Ying Wang 005} and {Kun Wang} and {Yang Young Lu} and {Fengzhu Sun}}
}
@article{journals/bmcbi/ZhangYRAFS17,
title = {Prediction of virus-host infectious association by supervised learning methods.},
year = {2017},
journal = {BMC Bioinform.},
author = {{Mengge Zhang} and {Lianping Yang} and {Jie Ren 006} and {Nathan A. Ahlgren} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/nar/LuTRFWS17,
title = {CAFE: aCcelerated Alignment-FrEe sequence analysis.},
year = {2017},
journal = {Nucleic Acids Res.},
author = {{Yang Young Lu} and {Kujin Tang} and {Jie Ren 006} and {Jed A. Fuhrman} and {Michael S. Waterman} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/YouZXSMZ18,
title = {GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank.},
year = {2018},
journal = {Bioinform.},
author = {{Ronghui You} and {Zihan Zhang} and {Yi Xiong} and {Fengzhu Sun} and {Hiroshi Mamitsuka} and {Shanfeng Zhu}}
}
@article{journals/bioinformatics/ChenCSWZ19,
title = {A new statistic for efficient detection of repetitive sequences.},
year = {2019},
journal = {Bioinform.},
author = {{Sijie Chen} and {Yixin Chen} and {Fengzhu Sun} and {Michael S. Waterman} and {Xuegong Zhang}}
}
@article{journals/bioinformatics/WangWLSZ19,
title = {SolidBin: improving metagenome binning with semi-supervised normalized cut.},
year = {2019},
journal = {Bioinform.},
author = {{Ziye Wang} and {Zhengyang Wang} and {Yang Young Lu} and {Fengzhu Sun} and {Shanfeng Zhu}}
}
@article{journals/nar/YouYXHSMZ19,
title = {NetGO: improving large-scale protein function prediction with massive network information.},
year = {2019},
journal = {Nucleic Acids Res.},
author = {{Ronghui You} and {Shuwei Yao} and {Yi Xiong} and {Xiaodi Huang} and {Fengzhu Sun} and {Hiroshi Mamitsuka} and {Shanfeng Zhu}}
}
@article{journals/bmcbi/ZhangSL19,
title = {Statistical significance approximation for local similarity analysis of dependent time series data.},
year = {2019},
month = {December},
journal = {BMC Bioinform.},
author = {{Fang Zhang} and {Fengzhu Sun} and {Yihui Luan}}
}
@article{journals/bib/WangWFSZ20,
title = {Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.},
year = {2020},
journal = {Briefings Bioinform.},
author = {{Ziye Wang} and {Ying Wang} and {Jed A. Fuhrman} and {Fengzhu Sun} and {Shanfeng Zhu}}
}
@article{journals/quanbio/DengFQWS20,
title = {International Workshop on Applications of Probability and Statistics to Biology, July 11-13, 2019.},
year = {2020},
journal = {Quant. Biol.},
author = {{Minghua Deng} and {Jianfeng Feng} and {Hong Qian} and {Lin Wan} and {Fengzhu Sun}}
}
@article{journals/quanbio/RenSDAFLXPS20,
title = {Identifying viruses from metagenomic data using deep learning.},
year = {2020},
journal = {Quant. Biol.},
author = {{Jie Ren 006} and {Kai Song} and {Chao Deng} and {Nathan A. Ahlgren} and {Jed A. Fuhrman} and {Yi Li} and {Xiaohui Xie} and {Ryan Poplin} and {Fengzhu Sun}}
}
@article{journals/quanbio/WanKRS20,
title = {Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data.},
year = {2020},
journal = {Quant. Biol.},
author = {{Lin Wan} and {Xin Kang} and {Jie Ren 006} and {Fengzhu Sun}}
}
@article{journals/bib/WangWFSZ21,
title = {Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.},
year = {2021},
journal = {Briefings Bioinform.},
author = {{Ziye Wang} and {Ying Wang} and {Jed A. Fuhrman} and {Fengzhu Sun} and {Shanfeng Zhu}}
}
@article{journals/bioinformatics/BaiRFS21,
title = {KIMI: Knockoff Inference for Motif Identification from molecular sequences with controlled false discovery rate.},
year = {2021},
journal = {Bioinform.},
author = {{Xin Bai 005} and {Jie Ren 006} and {Yingying Fan} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/LuBWWS21,
title = {CRAFT: Compact genome Representation toward large-scale Alignment-Free daTabase.},
year = {2021},
journal = {Bioinform.},
author = {{Yang Young Lu} and {Jiaxing Bai} and {Yiwen Wang} and {Ying Wang 005} and {Fengzhu Sun}}
}
@article{journals/bioinformatics/DuS22,
title = {HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.},
year = {2022},
journal = {Bioinform.},
author = {{Yuxuan Du} and {Fengzhu Sun}}
}
@article{journals/jcb/AnRSW22,
title = {A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence Analyses.},
year = {2022},
journal = {J. Comput. Biol.},
author = {{Shaokun An} and {Jie Ren 006} and {Fengzhu Sun} and {Lin Wan}}
}
@article{journals/jcb/DuLFS22,
title = {Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression.},
year = {2022},
journal = {J. Comput. Biol.},
author = {{Yuxuan Du} and {Sarah M. Laperriere} and {Jed A. Fuhrman} and {Fengzhu Sun}}
}
@article{journals/jcb/IstrailPSV22,
title = {Special Issue: Professor Michael Waterman's 80th Birthday, Part 1.},
year = {2022},
journal = {J. Comput. Biol.},
author = {{Sorin Istrail} and {Pavel A. Pevzner} and {Fengzhu Sun} and {Martin Vingron}}
}
@article{journals/jcb/PevznerVRSI22,
title = {Michael Waterman's Contributions to Computational Biology and Bioinformatics.},
year = {2022},
journal = {J. Comput. Biol.},
author = {{Pavel A. Pevzner} and {Martin Vingron} and {Christian M. Reidys} and {Fengzhu Sun} and {Sorin Istrail}}
}
@article{journals/neuroimage/JiaoLKGMJXXCHDS22,
title = {A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies.},
year = {2022},
journal = {NeuroImage},
author = {{Zeyu Jiao} and {Yinglei Lai} and {Jujiao Kang} and {Weikang Gong} and {Liang Ma} and {Tianye Jia} and {Chao Xie} and {Shitong Xiang} and {Wei Cheng 002} and {Andreas Heinz} and {Sylvane Desrivières} and {Gunter Schumann} and {Fengzhu Sun} and {Jianfeng Feng}}
}
@article{journals/ploscb/WangSLZ22,
title = {AC-PCoA: Adjustment for confounding factors using principal coordinate analysis.},
year = {2022},
journal = {PLoS Comput. Biol.},
author = {{Yu Wang} and {Fengzhu Sun} and {Wei Lin 003} and {Shuqin Zhang}}
}
@article{journals/ploscb/GaoS23,
title = {Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies.},
year = {2023},
month = {October},
journal = {PLoS Comput. Biol.},
author = {{Yilin Gao} and {Fengzhu Sun}}
}