Partition function and base pairing probabilities for RNA-RNA interaction prediction. - Fenix W. D. Huang; Jing Qin 006; Christian M. Reidys; Peter F. Stadler (Bioinform., 2009)

Sequence-structure relations of pseudoknot RNA. - Fenix W. D. Huang; Linda Y. M. Li; Christian M. Reidys (BMC Bioinform., 2009)

Folding 3-Noncrossing RNA Pseudoknot Structures. - Fenix W. D. Huang; Wade W. J. Peng; Christian M. Reidys (J. Comput. Biol., 2009)

Target prediction and a statistical sampling algorithm for RNA-RNA interaction. - Fenix W. D. Huang; Jing Qin 006; Christian M. Reidys; Peter F. Stadler (Bioinform., 2010)

On the Uniform Generation of Modular Diagrams. - Fenix W. D. Huang; Christian M. Reidys (Electron. J. Comb., 2010)

Topology and prediction of RNA pseudoknots. - Christian M. Reidys; Fenix W. D. Huang; Jørgen E. Andersen; Robert C. Penner; Peter F. Stadler; Markus E. Nebel (Bioinform., 2011)

On the combinatorics of sparsification. - Fenix W. D. Huang; Christian M. Reidys (Algorithms Mol. Biol., 2012)

Addendum: topology and prediction of RNA pseudoknots. - Christian M. Reidys; Fenix W. D. Huang; Jørgen E. Andersen; Robert C. Penner; Peter F. Stadler; Markus E. Nebel (Bioinform., 2012)

Topology of RNA-RNA Interaction Structures. - Jørgen E. Andersen; Fenix W. D. Huang; Robert C. Penner; Christian M. Reidys (J. Comput. Biol., 2012)

Uniform generation of RNA pseudoknot structures with genus filtration - Fenix W. D. Huang; Markus E. Nebel; Christian M. Reidys (CoRR, 2013)

Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA. - Christopher L. Barrett; Fenix W. D. Huang; Christian M. Reidys (BICT, 2015)

Topological language for RNA. - Fenix W. D. Huang; Christian M. Reidys (CoRR, 2016)

Sequence-structure relations of biopolymers. - Christopher L. Barrett; Fenix W. D. Huang; Christian M. Reidys (Bioinform., 2017)

A topological framework for signed permutations. - Fenix W. D. Huang; Christian M. Reidys (Discret. Math., 2017)

An Efficient Dual Sampling Algorithm with Hamming Distance Filtration. - Christopher L. Barrett; Qijun He; Fenix W. D. Huang; Christian M. Reidys (J. Comput. Biol., 2018)

A Boltzmann Sampler for 1-Pairs with Double Filtration. - Christopher L. Barrett; Qijun He; Fenix W. D. Huang; Christian M. Reidys (J. Comput. Biol., 2019)

The energy-spectrum of bicompatible sequences. - Fenix W. D. Huang; Christopher L. Barrett; Christian M. Reidys (Algorithms Mol. Biol., 2021)

Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. - Christopher L. Barrett; Andrei C. Bura; Qijun He; Fenix W. D. Huang; Thomas J. X. Li; Michael S. Waterman; Christian M. Reidys (J. Comput. Biol., 2021)

The site linkage spectrum of data arrays. - Christopher L. Barrett; Andrei C. Bura; Fenix W. D. Huang; Christian M. Reidys (CoRR, 2024)