Choix méthodologiques pour la construction d'une ontologie de domaine en médecine prénatale. - Ferdinand Dhombres; Jean-Marie Jouannic; Marie-Christine Jaulent; Jean Charlet (IC, 2010)

Projet OrphaOnto - Première étape de l'ontologisation des bases de connaissances d'Orphanet. - Ferdinand Dhombres; Pierre-Yves Vandenbussche; Ana Rath; Marc Hanauer; Annie Olry; Bruno Urbero; Jean Charlet (IC, 2011)

OntoOrpha: An Ontology to Support Edition and Audit of Knowledge of Rare Diseases in ORPHANET. - Ferdinand Dhombres; Pierre-Yves Vandenbussche; Ana Rath; Marc Hanauer; Annie Olry; Bruno Urbero; Rémy Choquet; Jean Charlet (ICBO, 2011)

Biomedical Analyses: OWL Model Based Edition. - Pierre-Yves Vandenbussche; Ferdinand Dhombres; Sylvie Cormont; Jean Charlet; Eric Lepage (ICBO, 2011)

Construire une ontologie médicale pour la recherche d'information : problématiques terminologiques et de modélisation. - Jean Charlet; Gunnar Declerck; Ferdinand Dhombres; Pierre Gayet; Patrick Miroux; Pierre-Yves Vandenbussche (IC, 2012)

Rare diseases knowledge management: the contribution of proximity measurements in OntoOrpha and OMIM. - Xavier Aimé; Jean Charlet; Frédéric Fürst; Pascale Kuntz; Francky Trichet; Ferdinand Dhombres (MIE, 2012)

OntoMénélas. Motivations et retours d'expérience sur l'élaboration d'une ontologie noyau de la médecine. - Jean Charlet; Bruno Bachimont; Laurent Mazuel; Ferdinand Dhombres; Marie-Christine Jaulent; Jacques Bouaud (Tech. Sci. Informatiques, 2012)

Un outil de visualisation de classifications et d'intégration de données phénotypiques et génétiques pour faciliter le codage des maladies rares. - Rémy Choquet; Yannick Fonjallaz; Albane de Carrara; Meriem Maaroufi; Pierre-Yves Vandenbussche; Ferdinand Dhombres; Paul Landais (JFIM, 2014)

LORD: a phenotype-genotype semantically integrated biomedical data tool to support rare disease diagnosis coding in health information systems. - Rémy Choquet; Meriem Maaroufi; Yannick Fonjallaz; Albane de Carrara; Pierre-Yves Vandenbussche; Ferdinand Dhombres; Paul Landais (AMIA, 2015)

Extending the coverage of phenotypes in SNOMED CT through post-coordination. - Ferdinand Dhombres; Rainer Winnenburg; James T. Case; Olivier Bodenreider (MedInfo, 2015)

Assessing the potential risk in drug prescriptions during pregnancy. - Ferdinand Dhombres; Vojtech Huser; Laritza M. Rodriguez; Olivier Bodenreider (AMIA, 2016)

Interoperability between phenotypes in research and healthcare terminologies - Investigating partial mappings between HPO and SNOMED CT. - Ferdinand Dhombres; Olivier Bodenreider (J. Biomed. Semant., 2016)

Searching for rare diseases in PubMed: a blind comparison of Orphanet expert query and query based on terminological knowledge. - Nicolas Griffon; Matthieu Schuers; Ferdinand Dhombres; Tayeb Merabti; Gaétan Kerdelhué; Laetitia Rollin; Stéfan Jacques Darmoni (BMC Medical Informatics Decis. Mak., 2016)

Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. - Ferdinand Dhombres; Olivier Bodenreider (MedInfo, 2017)

"Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. - Zhiguo Yu; Thang Nguyen 004; Ferdinand Dhombres; Todd R. Johnson; Olivier Bodenreider (MedInfo, 2017)

Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy. - Ferdinand Dhombres; Paul Maurice; Stéphanie Friszer; Lucie Guilbaud; Nathalie Lelong; Babak Khoshnood; Jean Charlet; Nicolas Perrot; Eric Jauniaux; Davor Jurkovic; Jean-Marie Jouannic (J. Biomed. Semant., 2017)

Modeling Logical Definitions in Biomedical Ontologies by Reusing Ontology Design Patterns. - Mirna El Ghosh; Fethi Ghazouani; Benjamin Birene; Elise Akan; Jean Charlet; Ferdinand Dhombres (ICBO, 2021)

Privileged Attribution Constrained Deep Networks for Facial Expression Recognition. - Jules Bonnard; Arnaud Dapogny; Ferdinand Dhombres; Kevin Bailly (ICPR, 2022)

Pattern-Based Logical Definitions of Prenatal Disorders Grounded on Dispositions. - Mirna El Ghosh; Fethi Ghazouani; Elise Akan; Jean Charlet; Ferdinand Dhombres (MIE, 2022)

Towards Semantic Interoperability Among Heterogeneous Cancer Data Models Using a Layered Modular Hyper-Ontology. - Mirna El Ghosh; Varvara Kalokyri; Mélanie Sambres; Morgan Vaterkowski; Catherine Duclos; Xavier Tannier; Gianna Tsakou; Manolis Tsiknakis; Christel Daniel; Ferdinand Dhombres (FOIS, 2024)

Ontology-Guided Deep Metric Learning and Applications to Obstetrics. - Jules Bonnard; Arnaud Dapogny; Ferdinand Dhombres; Kévin Bailly (ICPR (9), 2024)

Grounding a hyper-ontology on mCODE conceptual model and foundational ontologies for semantic interoperability in oncology. - Mirna El Ghosh; Christel Daniel; Catherine Duclos; Varvara Kalokyri; Jean Charlet; Mélanie Sambres; Gianna Tsakou; Manolis Tsiknakis; Ferdinand Dhombres (JOWO, 2024)

From Syntactic to Semantic Interoperability Using a Hyperontology in the Oncology Domain. - Mirna El Ghosh; Varvara Kalokyri; Mélanie Sambres; Morgan Vaterkowski; Catherine Duclos; Xavier Tannier; Gianna Tsakou; Manolis Tsiknakis; Christel Daniel; Ferdinand Dhombres (MIE, 2024)

Prior-Guided Attribution of Deep Neural Networks for Obstetrics and Gynecology. - Jules Bonnard; Arnaud Dapogny; Richard Zsamboki; Lucrezia De Braud; Davor Jurkovic; Kévin Bailly; Ferdinand Dhombres (IEEE J. Biomed. Health Informatics, 2024)

AI Models for Ultrasound Image Similarity Search: A Performance Evaluation. - Petra Takacs; Richard Zsamboki; Elod Kiss; Ferdinand Dhombres (BIOSTEC (2): HEALTHINF, 2025)