Identification of Potential Small Molecule Peptidomimetics Similar to Motifs in Proteins. - Ivan Baran; Radka Svobodová Vareková; Laavanya Parthasarathi; Simon Suchomel; Fergal P. Casey; Denis C. Shields (J. Chem. Inf. Model., 2007)

Universally Sloppy Parameter Sensitivities in Systems Biology Models. - Ryan N. Gutenkunst; Joshua J. Waterfall; Fergal P. Casey; Kevin S. Brown 001; Christopher R. Myers; James P. Sethna (PLoS Comput. Biol., 2007)

Optimal stepwise experimental design for pairwise functional interaction studies. - Fergal P. Casey; Gerard Cagney; Nevan J. Krogan; Denis C. Shields (Bioinform., 2008)

Web Server To Identify Similarity of Amino Acid Motifs to Compounds (SAAMCO). - Fergal P. Casey; Norman E. Davey; Ivan Baran; Radka Svobodová Vareková; Denis C. Shields (J. Chem. Inf. Model., 2008)

Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs. - Laavanya Parthasarathi; Fergal P. Casey; Amelie Stein; Patrick Aloy; Denis C. Shields (J. Chem. Inf. Model., 2008)

Discovery of Small Molecule Inhibitors of Protein-Protein Interactions Using Combined Ligand and Target Score Normalization. - Fergal P. Casey; Emilie Pihan; Denis C. Shields (J. Chem. Inf. Model., 2009)

Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs. - Fergal P. Casey; Nevan J. Krogan; Denis C. Shields; Gerard Cagney (BMC Syst. Biol., 2011)

Alternate virtual populations elucidate the type I interferon signature predictive of the response to rituximab in rheumatoid arthritis. - Brian J. Schmidt; Fergal P. Casey; Thomas Paterson; Jason R. Chan (BMC Bioinform., 2013)

Discovering Anti-platelet Drug Combinations with an Integrated Model of Activator-Inhibitor Relationships, Activator-Activator Synergies and Inhibitor-Inhibitor Synergies. - Federica Lombardi; Kalyan Golla; Darren J. Fitzpatrick; Fergal P. Casey; Niamh Moran; Denis C. Shields (PLoS Comput. Biol., 2015)