AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks. - Val F. Lanza; Fernando Baquero; Fernando de la Cruz; Teresa M. Coque (Bioinform., 2017)

A Model of Antibiotic Resistance Evolution Dynamics Through P Systems with Active Membranes and Communication Rules. - Fernando Baquero; Marcelino Campos; Carlos Lloréns; José M. Sempere (Enjoying Natural Computing, 2018)

PATO: Pangenome Analysis Toolkit. - Miguel D. Fernández-de-Bobadilla; Alba Talavera-Rodríguez; Lucía Chacón; Fernando Baquero; Teresa M. Coque; Val F. Lanza (Bioinform., 2021)

P systems in the time of COVID-19. - Fernando Baquero; Marcelino Campos; Carlos Lloréns; José M. Sempere (J. Membr. Comput., 2021)