Anticipated Test Design and Its Application to Evaluate and Select Embedded Libraries. - Clauirton de Siebra; Carla Nascimento; Leonardo Sodre; Antonio L. O. Cavalcanti; Daniel Barros; Fernando Lima; Fernando Cruz; Fabio Q. B. da Silva; André L. M. Santos (SERA (selected papers), 2017)

Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression. - Fernando Cruz; Diogo Lima; José P. Faria; Miguel Rocha 001; Oscar Dias (PACBB, 2019)

SamPler - a novel method for selecting parameters for gene functional annotation routines. - Fernando Cruz; Davide Lagoa; João Mendes; Isabel Rocha; Eugénio C. Ferreira; Miguel Rocha 001; Oscar Dias (BMC Bioinform., 2019)

Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis. - Diogo Lima; Fernando Cruz; Miguel Rocha 001; Oscar Dias (PACBB, 2020)

Reconciliation of regulatory data: the regulatory networks of Escherichia coli and Bacillus subtilis. - Diogo Lima; Fernando Cruz; Miguel Rocha 001; Oscar Dias (Zenodo, 2020)

Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Oscar Dias (PACBB, 2021)

MEWpy: a computational strain optimization workbench in Python. - Vitor Pereira 001; Fernando Cruz; Miguel Rocha 001 (Bioinform., 2021)

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias (J. Integr. Bioinform., 2022)

BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models. - Fernando Cruz; João Capela; Eugénio C. Ferreira; Miguel Rocha 001; Oscar Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)