Computational methods for Gene Regulatory Networks reconstruction and analysis: A review. - Fernando M. Delgado-Chaves; Francisco Gómez-Vela (Artif. Intell. Medicine, 2019)

Ensemble and Greedy Approach for the Reconstruction of Large Gene Co-Expression Networks. - Francisco Gómez-Vela; Fernando M. Delgado-Chaves; Domingo S. Rodríguez-Baena; Miguel García-Torres; Federico Divina (Entropy, 2019)

UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data. - Michael Hartung; Andreas Maier 009; Fernando M. Delgado-Chaves; Yuliya Burankova; Olga I. Isaeva; Fábio Malta de Sá Patroni; Daniel He; Casey Shannon; Katharina Kaufmann; Jens Lohmann; Alexey Savchik; Anne Hartebrodt; et al. (CoRR, 2024)

Optimized Python library for reconstruction of ensemble-based gene co-expression networks using multi-GPU. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; María del Saz-Navarro; Fernando M. Delgado-Chaves; Domingo S. Rodríguez-Baena (J. Supercomput., 2024)

Biclustering in bioinformatics using big data and High Performance Computing applications: challenges and perspectives, a review. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; Domingo S. Rodríguez-Baena; Fernando M. Delgado-Chaves; Jorge González-Domínguez (J. Supercomput., 2025)

DRaCOon: a novel algorithm for pathway-level differential co-expression analysis in transcriptomics. - Fernando M. Delgado-Chaves; Ferdinand Spurny; Tanja Laske; Mhaned Oubounyt; Jan Baumbach (BMC Bioinform., 2025)