Simulating association studies: a data-based resampling method for candidate regions or whole genome scans. - Fred A. Wright; Hanwen Huang; Xiaojun Guan; Kevin Gamiel; Clark D. Jeffries; William T. Barry; Fernando Pardo-Manuel de Villena; Patrick F. Sullivan; Kirk C. Wilhelmsen; Fei Zou (Bioinform., 2007)

Efficient Data-Mining Methods Enabling Genome-Wide Computing. - Wei Wang 010; Leonard McMillan; David Threadgill; Fernando Pardo-Manuel de Villena (Next Generation of Data Mining, 2008)

Quantitative Association Analysis Using Tree Hierarchies. - Feng Pan 001; Lynda Yang; Leonard McMillan; Fernando Pardo-Manuel de Villena; David Threadgill; Wei Wang 010 (ICDM, 2008)

Genotype Sequence Segmentation: Handling Constraints and Noise. - Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins; Fernando Pardo-Manuel de Villena; David Threadgill (WABI, 2008)

TreeQA: Quantitative Genome Wide Association Mapping Using Local Perfect Phylogeny Trees. - Feng Pan 001; Leonard McMillan; Fernando Pardo-Manuel de Villena; David Threadgill; Wei Wang 010 (Pacific Symposium on Biocomputing, 2009)

Inferring Genome-Wide Mosaic Structure. - Qi Zhang 025; Wei Wang 010; Leonard McMillan; Fernando Pardo-Manuel de Villena; David Threadgill (Pacific Symposium on Biocomputing, 2009)

Genome-wide compatible SNP intervals and their properties. - Jeremy W. Wang; Kyle J. Moore; Qi Zhang 025; Fernando Pardo-Manuel de Villena; Wei Wang 010; Leonard McMillan (BCB, 2010)

CGDSNPdb: a database resource for error-checked and imputed mouse SNPs. - Lucie N. Hutchins; Yueming Ding; Jin P. Szatkiewicz; Randy von Smith; Hyuna Yang; Fernando Pardo-Manuel de Villena; Gary A. Churchill; Joel H. Graber (Database J. Biol. Databases Curation, 2010)

Efficient genome ancestry inference in complex pedigrees with inbreeding. - Eric Yi Liu; Qi Zhang 025; Leonard McMillan; Fernando Pardo-Manuel de Villena; Wei Wang 010 (Bioinform., 2010)

Dynamic visualization and comparative analysis of multiple collinear genomic data. - Jeremy W. Wang; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2011)

Inferring ancestry in admixed populations using microarray probe intensities. - Chen-Ping Fu; Catherine E. Welsh; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2012)

Comparative analysis and visualization of multiple collinear genomes. - Jeremy R. Wang; Fernando Pardo-Manuel de Villena; Leonard McMillan (BMC Bioinform., 2012)

Fine-Scale Recombination Mapping of High-Throughput Sequence Data. - Catherine E. Welsh; Chen-Ping Fu; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2013)

GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment. - Zhaojun Zhang; Shunping Huang; Jack Wang 004; Xiang Zhang 001; Fernando Pardo-Manuel de Villena; Leonard McMillan; Wei Wang 010 (Bioinform., 2013)

Quantitative trait loci mapping with microarray marker intensities. - Chen-Ping Fu; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2014)

ELITE: Efficiently Locating Insertions of Transposable Elements. - Anwica Kashfeen; Harper B. Fauni; Timothy A. Bell; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2019)

A k-mer query tool for assessing population diversity in pangenomes. - Hang Su 010; Ziwei Chen; Maya L. Najarian; Martin T. Ferris; Fernando Pardo-Manuel de Villena; Leonard McMillan (BCB, 2021)