Silence - A web framework for an agile generation of RESTful APIs. - Agustín Borrego; Miguel Bermudo; Fernando Sola; Daniel Ayala 001; Inma Hernández; David Ruiz 001 (SoftwareX, 2022)

AYNEXT - tools for streamlining the evaluation of link prediction techniques. - Fernando Sola; Daniel Ayala 001; Rafael Ayala; Inma Hernández; Carlos R. Rivero; David Ruiz 001 (SoftwareX, 2023)

Deep embeddings and Graph Neural Networks: using context to improve domain-independent predictions. - Fernando Sola; Daniel Ayala 001; Inma Hernández; David Ruiz 001 (Appl. Intell., 2023)

Gintegrator: Enhancing biological sequences data integration with real-time identifier translation. - Fernando Sola; Daniel Ayala 001; Marina Pulido; Rafael Ayala; Lorena López-Cerero; Inma Hernández; David Ruiz 001 (SoftwareX, 2025)

Corrigendum to "Gintegrator: Enhancing biological sequences data integration with real-time identifier translation" [SoftwareX, Volume 29 (2025), 102041]. - Fernando Sola; Daniel Ayala 001; Marina Pulido; Rafael Ayala; Lorena López-Cerero; Inma Hernández; David Ruiz 001 (SoftwareX, 2025)