Investigations into within- and between-subject resting-state amplitude variations. - Janine Bijsterbosch; Samuel J. Harrison; Eugene P. Duff; Fidel Alfaro-Almagro; Mark W. Woolrich; Stephen M. Smith 001 (NeuroImage, 2017)

Hand classification of fMRI ICA noise components. - Ludovica Griffanti; Gwenaëlle Douaud; Janine D. Bijsterbosch; Stefania Evangelisti; Fidel Alfaro-Almagro; Matthew F. Glasser; Eugene P. Duff; Sean P. Fitzgibbon; Robert Westphal; Davide Carone; Christian F. Beckmann; Stephen M. Smith 001 (NeuroImage, 2017)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. - Krzysztof J. Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capota; M. Mallar Chakravarty; Nathan William Churchill; Alexander Li Cohen; R. Cameron Craddock; Gabriel A. Devenyi; Anders Eklund 002; Oscar Esteban; et al. (PLoS Comput. Biol., 2017)

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. - Fidel Alfaro-Almagro; Mark Jenkinson; Neal K. Bangerter; Jesper L. R. Andersson; Ludovica Griffanti; Gwenaëlle Douaud; Stamatios N. Sotiropoulos; Saâd Jbabdi; Moisés Hernández-Fernández; Emmanuel Vallée; Diego Vidaurre; Matthew A. Webster; et al. (NeuroImage, 2018)

Discovering dynamic brain networks from big data in rest and task. - Diego Vidaurre; Romesh G. Abeysuriya; Robert Becker; Andrew J. Quinn 003; Fidel Alfaro-Almagro; Stephen M. Smith 001; Mark W. Woolrich (NeuroImage, 2018)

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. - Matteo Bastiani; Michiel Cottaar; Sean P. Fitzgibbon; Sana Suri; Fidel Alfaro-Almagro; Stamatios N. Sotiropoulos; Saâd Jbabdi; Jesper L. R. Andersson (NeuroImage, 2019)

Estimation of brain age delta from brain imaging. - Stephen M. Smith 001; Diego Vidaurre; Fidel Alfaro-Almagro; Thomas E. Nichols; Karla L. Miller (NeuroImage, 2019)

Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. - Vaanathi Sundaresan; Ludovica Griffanti; Petya Kindalova; Fidel Alfaro-Almagro; Giovanna Zamboni; Peter M. Rothwell; Thomas E. Nichols; Mark Jenkinson (NeuroImage, 2019)

ICAM-reg: Interpretable Classification and Regression with Feature Attribution for Mapping Neurological Phenotypes in Individual Scans. - Cher Bass; Mariana da Silva; Carole H. Sudre; Logan Z. J. Williams; Petru-Daniel Tudosiu; Fidel Alfaro-Almagro; Sean P. Fitzgibbon; Matthew F. Glasser; Stephen M. Smith 001; Emma C. Robinson (CoRR, 2021)

Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Robert A. Dineen; Peter M. Rothwell; Stamatios N. Sotiropoulos; Dorothee P. Auer; Daniel J. Tozer; Hugh S. Markus; Karla L. Miller; Iulius Dragonu; Nikola Sprigg; et al. (Frontiers Neuroinformatics, 2021)

Confound modelling in UK Biobank brain imaging. - Fidel Alfaro-Almagro; Paul McCarthy; Soroosh Afyouni; Jesper L. R. Andersson; Matteo Bastiani; Karla L. Miller; Thomas E. Nichols; Stephen M. Smith 001 (NeuroImage, 2021)

Amplitudes of resting-state functional networks - investigation into their correlates and biophysical properties. - Soojin Lee; Janine D. Bijsterbosch; Fidel Alfaro-Almagro; Lloyd T. Elliott; Paul McCarthy; Bernd Taschler; Roser Sala-Llonch; Christian F. Beckmann; Eugene P. Duff; Stephen M. Smith 001; Gwenaëlle Douaud (NeuroImage, 2023)

Automated detection of cerebral microbleeds on MR images using knowledge distillation framework. - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Andrew G. Murchison; Robert A. Dineen; Peter M. Rothwell; Dorothee P. Auer; Chaoyue Wang; Karla L. Miller; Benjamin C. Tendler; Fidel Alfaro-Almagro; Stamatios N. Sotiropoulos; et al. (Frontiers Neuroinformatics, 2023)

ICAM-Reg: Interpretable Classification and Regression With Feature Attribution for Mapping Neurological Phenotypes in Individual Scans. - Cher Bass; Mariana da Silva; Carole H. Sudre; Logan Z. J. Williams; Helena S. Sousa; Petru-Daniel Tudosiu; Fidel Alfaro-Almagro; Sean P. Fitzgibbon; Matthew F. Glasser; Stephen M. Smith 001; Emma C. Robinson (IEEE Trans. Medical Imaging, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)