3D-QSAR and Molecular Mechanics Study for the Differences in the Azole Activity against Yeastlike and Filamentous Fungi and Their Relation to P450DM Inhibition. 1. 3-Substituted-4(3H)-quinazolinones. - Filip Fratev; Emilio Benfenati (J. Chem. Inf. Model., 2005)

Discovery of a Novel Selective PPARγ Ligand with Partial Agonist Binding Properties by Integrated in Silico/in Vitro Work Flow. - Irene Kouskoumvekaki; Rasmus K. Petersen; Filip Fratev; Olivier Taboureau; Thomas E. Nielsen; Tudor I. Oprea; Si B. Sonne; Esben N. Flindt; Svava Ósk Jónsdóttir; Karsten Kristiansen (J. Chem. Inf. Model., 2013)

Combination of Genetic Screening and Molecular Dynamics as a Useful Tool for Identification of Disease-Related Mutations: ZASP PDZ Domain G54S Mutation Case. - Filip Fratev; Elina Mihaylova; Ilza Pajeva (J. Chem. Inf. Model., 2014)

Molecular dynamics simulation of the human estrogen receptor alpha: contribution to the pharmacophore of the agonists. - Dessislava Jereva; Filip Fratev; Ivanka Tsakovska; Petko Alov; Tania Pencheva; Ilza Pajeva (Math. Comput. Simul., 2017)

N501Y and K417N Mutations in the Spike Protein of SARS-CoV-2 Alter the Interactions with Both hACE2 and Human-Derived Antibody: A Free Energy of Perturbation Retrospective Study. - Filip Fratev (J. Chem. Inf. Model., 2021)

R346K Mutation in the Mu Variant of SARS-CoV-2 Alters the Interactions with Monoclonal Antibodies from Class 2: A Free Energy Perturbation Study. - Filip Fratev (J. Chem. Inf. Model., 2022)