DIC Image Segmentation of Dense Cell Populations by Combining Deep Learning and Watershed. - Filip Lux; Petr Matula (ISBI, 2019)

Cell Segmentation by Combining Marker-Controlled Watershed and Deep Learning. - Filip Lux; Petr Matula (CoRR, 2020)

Cell Tracking Based on Integer Linear Programming and Probability Scores. - Filip Lux; Petr Matula (ISBI, 2024)

Bio-Volumentations: A Python library for augmentation of volumetric image sequences. - Lucia Hradecká; Filip Lux; Samuel Sul'an; Petr Matula (SoftwareX, 2025)