Variability in diffusion kurtosis imaging: Impact on study design, statistical power and interpretation. - Filip Szczepankiewicz; Jimmy Lätt; Ronnie Wirestam; Alexander Leemans; Pia C. Sundgren; Danielle van Westen; Freddy Ståhlberg; Markus Nilsson (NeuroImage, 2013)

Measurement Tensors in Diffusion MRI: Generalizing the Concept of Diffusion Encoding. - Carl-Fredrik Westin; Filip Szczepankiewicz; Ofer Pasternak; Evren Özarslan; Daniel Topgaard; Hans Knutsson; Markus Nilsson (MICCAI (3), 2014)

Quantification of microscopic diffusion anisotropy disentangles effects of orientation dispersion from microstructure: Applications in healthy volunteers and in brain tumors. - Filip Szczepankiewicz; Samo Lasic; Danielle van Westen; Pia C. Sundgren; Elisabet Englund; Carl-Fredrik Westin; Freddy Ståhlberg; Jimmy Lätt; Daniel Topgaard; Markus Nilsson (NeuroImage, 2015)

The link between diffusion MRI and tumor heterogeneity: Mapping cell eccentricity and density by diffusional variance decomposition (DIVIDE). - Filip Szczepankiewicz; Danielle van Westen; Elisabet Englund; Carl-Fredrik Westin; Freddy Ståhlberg; Jimmy Lätt; Pia C. Sundgren; Markus Nilsson (NeuroImage, 2016)

Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. - Carl-Fredrik Westin; Hans Knutsson; Ofer Pasternak; Filip Szczepankiewicz; Evren Özarslan; Danielle van Westen; Cecilia Mattisson; Mats Bogren; Lauren J. O'Donnell; Marek Kubicki; Daniel Topgaard; Markus Nilsson (NeuroImage, 2016)

Neurite density imaging versus imaging of microscopic anisotropy in diffusion MRI: A model comparison using spherical tensor encoding. - Björn Lampinen; Filip Szczepankiewicz; Johan Mårtensson; Danielle van Westen; Pia C. Sundgren; Markus Nilsson (NeuroImage, 2017)

Separating blood and water: Perfusion and free water elimination from diffusion MRI in the human brain. - Anna S. Rydhög; Filip Szczepankiewicz; Ronnie Wirestam; André Ahlgren; Carl-Fredrik Westin; Linda Knutsson; Ofer Pasternak (NeuroImage, 2017)

Imaging brain tumour microstructure. - Markus Nilsson; Elisabet Englund; Filip Szczepankiewicz; Danielle van Westen; Pia C. Sundgren (NeuroImage, 2018)

Improved fibre dispersion estimation using b-tensor encoding. - Michiel Cottaar; Filip Szczepankiewicz; Matteo Bastiani; Moisés Hernández-Fernández; Stamatios N. Sotiropoulos; Markus Nilsson; Saâd Jbabdi (NeuroImage, 2020)

The dot-compartment revealed? Diffusion MRI with ultra-strong gradients and spherical tensor encoding in the living human brain. - Chantal M. W. Tax; Filip Szczepankiewicz; Markus Nilsson; Derek K. Jones (NeuroImage, 2020)

Joint RElaxation-Diffusion Imaging Moments to Probe Neurite Microstructure. - Lipeng Ning; Borjan A. Gagoski; Filip Szczepankiewicz; Carl-Fredrik Westin; Yogesh Rathi (IEEE Trans. Medical Imaging, 2020)

Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. - Alexis Reymbaut; Alex Valcourt Caron; Guillaume Gilbert; Filip Szczepankiewicz; Markus Nilsson; Simon K. Warfield; Maxime Descoteaux; Benoit Scherrer (Medical Image Anal., 2021)

Multi-tissue spherical deconvolution of tensor-valued diffusion MRI. - Ben Jeurissen; Filip Szczepankiewicz (NeuroImage, 2021)

Comparative analysis of signal models for microscopic fractional anisotropy estimation using q-space trajectory encoding. - Leevi Kerkelä; Fabio Nery; Ross Callaghan; Fenglei Zhou; Noemi G. Gyori; Filip Szczepankiewicz; Marco Palombo; Geoff J. M. Parker; Hui Zhang 005; Matt G. Hall; Chris A. Clark (NeuroImage, 2021)

Neural networks for parameter estimation in microstructural MRI: Application to a diffusion-relaxation model of white matter. - João P. de Almeida Martins; Markus Nilsson; Björn Lampinen; Marco Palombo; Peter T. While; Carl-Fredrik Westin; Filip Szczepankiewicz (NeuroImage, 2021)

Accuracy and precision in super-resolution MRI: Enabling spherical tensor diffusion encoding at ultra-high b-values and high resolution. - Geraline Vis; Markus Nilsson; Carl-Fredrik Westin; Filip Szczepankiewicz (NeuroImage, 2021)

Microstructural neuroimaging using spherical convolutional neural networks. - Leevi Kerkelä; Kiran K. Seunarine; Filip Szczepankiewicz; Chris A. Clark (CoRR, 2022)

Phase Correction and Noise-to-Noise Denoising of Diffusion Magnetic Resonance Images Using Neural Networks. - Jakub Jurek; Andrzej Materka; Kamil Ludwisiak; Agata Majos; Filip Szczepankiewicz (ICCS (2), 2023)

Improving the Resolution and SNR of Diffusion Magnetic Resonance Images From a Low-Field Scanner. - Jakub Jurek; Kamil Ludwisiak; Andrzej Materka; Filip Szczepankiewicz (PCBBE, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Probing brain tissue microstructure with MRI: principles, challenges, and the role of multidimensional diffusion-relaxation encoding. - Björn Lampinen; Filip Szczepankiewicz; Jimmy Lätt; Linda Knutsson; Johan Mårtensson; Isabella M. Björkman-Burtscher; Danielle van Westen; Pia C. Sundgren; Freddy Ståhlberg; Markus Nilsson (NeuroImage, 2023)

Diffusion MRI with free gradient waveforms on a high-performance gradient system: Probing restriction and exchange in the human brain. - Arthur Chakwizira; Ante Zhu; Thomas K. F. Foo; Carl-Fredrik Westin; Filip Szczepankiewicz; Markus Nilsson (NeuroImage, 2023)

MBD: Multi b-value Denoising of Diffusion Magnetic Resonance Images. - Jakub Jurek; Andrzej Materka; Kamil Ludwisiak; Agata Majos; Filip Szczepankiewicz (CoRR, 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

Outlier detection in cardiac diffusion tensor imaging: Shot rejection or robust fitting? - Sam Coveney; Maryam Afzali; Lars Mueller 008; Irvin Teh; Arka Das; Erica Dall' Armellina; Filip Szczepankiewicz; Derek K. Jones; Jürgen E. Schneider (Medical Image Anal., 2025)