Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. - Filipp Rondel; Akram Sadat Hosseini; Bikram Sahoo; Sergey Knyazev; Igor Mandric; Frank Stewart; Ion I. Mandoiu; Bogdan Pasaniuc; Alex Zelikovsky (ISBRA, 2020)

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. - Filipp Rondel; Roya Hosseini; Bikram Sahoo; Sergey Knyazev; Igor Mandric; Frank Stewart; Ion I. Mandoiu; Bogdan Pasaniuc; Yuri Porozov; Alexander Zelikovsky (J. Comput. Biol., 2021)

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella-Infected and Uninfected Mice. - Filipp Rondel; Hafsa Farooq; Roya Hosseini; Akshay Juyal; Sergey Knyazev; Serghei Mangul; Artem S. Rogovskyy; Alexander Zelikovsky (J. Comput. Biol., 2025)