Qualitative translation of relations from BioPAX to SBML qual. - Finja Büchel; Clemens Wrzodek; Florian Mittag; Andreas Dräger; Johannes Eichner; Nicolas Rodriguez 001; Nicolas Le Novère; Andreas Zell (Bioinform., 2012)

InCroMAP: integrated analysis of cross-platform microarray and pathway data. - Clemens Wrzodek; Johannes Eichner; Finja Büchel; Andreas Zell (Bioinform., 2013)

Path2Models: large-scale generation of computational models from biochemical pathway maps. - Finja Büchel; Nicolas Rodriguez 001; Neil Swainston; Clemens Wrzodek; Tobias Czauderna; Roland Keller; Florian Mittag; Michael Schubert; Mihai Glont; Martin Golebiewski; Martijn P. van Iersel; Sarah M. Keating; et al. (BMC Syst. Biol., 2013)

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. - Claudine Chaouiya; Duncan Bérenguier; Sarah M. Keating; Aurélien Naldi; Martijn P. van Iersel; Nicolas Rodriguez 001; Andreas Dräger; Finja Büchel; Thomas Cokelaer; Bryan M. Kowal; Benjamin Wicks; Emanuel J. V. Gonçalves; et al. (BMC Syst. Biol., 2013)

Precise generation of systems biology models from KEGG pathways. - Clemens Wrzodek; Finja Büchel; Manuel Ruff; Andreas Dräger; Andreas Zell (BMC Syst. Biol., 2013)

Pathway-based analysis and modeling for the investigation of genetic disorders. - Finja Wrzodek (Verlag Dr. Hut, 2014)

JSBML 1.0: providing a smorgasbord of options to encode systems biology models. - Nicolas Rodriguez 001; Alex Thomas; Leandro H. Watanabe; Ibrahim Y. Vazirabad; Victor Kofia; Harold F. Gómez; Florian Mittag; Jakob Matthes; Jan Rudolph; Finja Wrzodek; Eugen Netz; Alexander Diamantikos; et al. (Bioinform., 2015)