Multi-modal imaging of histological tissue sections. - Ali Can; Musodiq O. Bello; Harvey E. Cline; Xiaodong Tao; Fiona Ginty; Anup Sood; Michael J. Gerdes; Michael Montalto (ISBI, 2008)

Multiplexed Analysis of Proteins in Tissue Using Multispectral Fluorescence Imaging. - Eugene Barash; Sean Dinn; Christopher Sevinsky; Fiona Ginty (IEEE Trans. Medical Imaging, 2010)

Methods and algorithms for extracting high-content signatures from cells, tissues, and model organisms. - Jens Rittscher; Dirk Ryan Padfield; A. Santamaria; J. Tu; Ali Can; Musodiq O. Bello; Dashan Gao; Anup Sood; Michael J. Gerdes; Fiona Ginty (ISBI, 2011)

Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue. - Michael J. Gerdes; Christopher J. Sevinsky; Anup Sood; Sudeshna Adak; Musodiq O. Bello; Alexander Bordwell; Ali Can; Alex Corwin; Sean Dinn; Robert Filkins; Denise Hollman; Vidya Kamath; et al. (Proc. Natl. Acad. Sci. USA, 2013)

Multi-channel algorithm for segmentation of tumor blood vessels using multiplexed image data. - Yousef Al-Kofahi; Christopher Sevinsky; Alberto Santamaría-Pang; Fiona Ginty; Anup Sood; Qing Li (ISBI, 2016)

Robust single cell quantification of immune cell subtypes in histological samples. - Alberto Santamaría-Pang; Raghav K. Padmanabhan; Anup Sood; Michael J. Gerdes; Christopher Sevinsky; Qing Li; Nicole LaPlante; Fiona Ginty (BHI, 2017)

Image analytic algorithms for automated cell segmentation quality control. - Yousef Al-Kofahi; Fiona Ginty (ISBI, 2018)

Automated Phenotyping via Cell Auto Training (CAT) on the Cell DIVE Platform. - Alberto Santamaría-Pang; Anup Sood; Dan E. Meyer; Aritra Chowdhury; Fiona Ginty (BIBM, 2019)

Automated multi-class ground-truth labeling of H&E images for deep learning using multiplexed fluorescence microscopy. - Gouthamrajan Nadarajan; Tyna A. Hope; Dan Wang; Alison M. Cheung; Fiona Ginty; Martin J. Yaffe; Scott Doyle (Digital Pathology, 2019)

FLINO: a new method for immunofluorescence bioimage normalization. - John F. Graf; Sanghee Cho; Elizabeth McDonough; Alex Corwin; Anup Sood; Andreas Lindner; Manuela Salvucci; Xanthi Stachtea; Sandra Van Schaeybroeck; Philip D. Dunne; Pierre Laurent-Puig; Daniel B. Longley; et al. (Bioinform., 2022)

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images. - Grigorios M. Karageorgos; Sanghee Cho; Elizabeth McDonough; Chrystal Chadwick; Soumya Ghose; Jonathan Owens; Kyeong Joo Jung; Raghu Machiraju; Robert West; James D. Brooks; Parag Mallick; Fiona Ginty (Frontiers Bioinform., 2023)