Detecting Anatomical Entities in Clinical Text. - Jun Xu 007; Yaoyun Zhang; Jingcheng Du; Jingqi Wang; Firat Tiryaki; Hua Xu 001 (AMIA, 2018)

Parsing Clinical Text: How Good are the state-of-the-art Deep Learning Based Parsers? - Yaoyun Zhang; Firat Tiryaki; Min Jiang 007; Hua Xu 001 (ICHI Workshops, 2018)

DataMed - an open source discovery index for finding biomedical datasets. - Xiaoling Chen; Anupama E. Gururaj; Ibrahim Burak Özyurt; Ruiling Liu; Ergin Soysal; Trevor Cohen; Firat Tiryaki; Yueling Li; Nansu Zong; Min Jiang 007; Deevakar Rogith; Mandana Salimi; et al. (J. Am. Medical Informatics Assoc., 2018)

Relation Extraction from Clinical Narratives Using Pre-trained Language Models. - Qiang Wei 002; Zongcheng Ji; Yuqi Si; Jingcheng Du; Jingqi Wang; Firat Tiryaki; Stephen Wu 004; Cui Tao; Kirk Roberts; Hua Xu 001 (AMIA, 2019)

Time-sensitive clinical concept embeddings learned from large electronic health records. - Yang Xiang 003; Jun Xu 007; Yuqi Si; Zhiheng Li 004; Laila Rasmy; Yujia Zhou 003; Firat Tiryaki; Fang Li 011; Yaoyun Zhang; Yonghui Wu; Xiaoqian Jiang; W. Jim Zheng; et al. (BMC Medical Informatics Decis. Mak., 2019)

Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison. - Yaoyun Zhang; Firat Tiryaki; Min Jiang 007; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2019)

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies. - Laila Rasmy; Firat Tiryaki; Yujia Zhou 003; Yang Xiang 003; Cui Tao; Hua Xu 001; Degui Zhi (J. Am. Medical Informatics Assoc., 2020)

A study of deep learning approaches for medication and adverse drug event extraction from clinical text. - Qiang Wei 002; Zongcheng Ji; Zhiheng Li 004; Jingcheng Du; Jingqi Wang; Jun Xu 007; Yang Xiang 003; Firat Tiryaki; Stephen Wu 004; Yaoyun Zhang; Cui Tao; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2020)

Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data. - Laila Rasmy; Jie Zhu; Zhiheng Li 004; Xin Hao; Hong Thoai Tran; Yujia Zhou 003; Firat Tiryaki; Yang Xiang 003; Hua Xu 001; Degui Zhi (CoRR, 2021)